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AT1G69400.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

7-day old Arabidopsis seedling (no marker)

RFP-At1g69400
(full-length)
overlay

SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G19590.1); Has 5887 Blast hits to 4402 proteins in 383 species: Archae - 8; Bacteria - 1488; Metazoa - 1614; Fungi - 1420; Plants - 449; Viruses - 0; Other Eukaryotes - 908 (source: NCBI BLink).
Protein Annotations
BioGrid:28493eggNOG:ENOG410XRBGeggNOG:KOG1036EMBL:AC018364
EMBL:AC073178EMBL:AY088063EMBL:BX814360EMBL:CP002684
EnsemblPlants:AT1G69400EnsemblPlants:AT1G69400.1entrez:843272Gene3D:2.130.10.10
GeneID:843272Genevisible:F4I241GO:GO:0000777GO:GO:0005634
GO:GO:0005819GO:GO:0007059GO:GO:0007067GO:GO:0009524
GO:GO:0051301GO:GO:0051321GO:GO:0080008hmmpanther:PTHR10971
hmmpanther:PTHR10971:SF17HOGENOM:HOG000208822InParanoid:F4I241IntAct:F4I241
InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986InterPro:IPR019775
KEGG:ath:AT1G69400KO:K02180OMA:DCCFENEPaxDb:F4I241
Pfam:F4I241Pfscan:PS50082Pfscan:PS50294PRO:PR:F4I241
PROSITE:PS00678PROSITE:PS50082PROSITE:PS50294ProteinModelPortal:F4I241
Proteomes:UP000006548Reactome:R-ATH-141430Reactome:R-ATH-174184Reactome:R-ATH-179409
RefSeq:NP_564965.1RefSeq:NP_974113.1scanprosite:PS00678SMART:SM00320
SMR:F4I241STRING:3702.AT1G69400.1SUPFAM:SSF50978TAIR:AT1G69400
UniGene:At.35426UniProt:F4I241
Coordinates (TAIR10) chr1:+:26087027..26088806
Molecular Weight (calculated) 34765.30 Da
IEP (calculated) 4.65
GRAVY (calculated) -0.30
Length 314 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGDRLEFEN PIEDAVSRLR FSPQSNNLLV ASWDSYLRLY DVESSSLSLE LNSQAALLDC CFENESTSFT SGSDGFIRRY DLNAGTVDTI GRHDDISTSI
101: VYSYEKGEVI STGFDEKIKF WDTRQRESLV FSTDAGGAVG CVTVSGNNLV VCVDASMHIY DLRNLDEAFQ SYASQVEVPI RCITSVPYSR GYAVGSVDGR
201: VAVDFPNTSC SSEIKYSFRC HPKSRNGRLD GVCINAIEFS PCGSGTFVTG DNEGYVISWN AKSRRRLNEL PRYSNSIASL AFDHTGELLA IASSHTYQDA
301: KEKEEAPQVF IHRL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)