AT1G65040.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RING/U-box superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G16090.1); Has 7722 Blast hits to 7710 proteins in 269 species: Archae - 0; Bacteria - 0; Metazoa - 2325; Fungi - 695; Plants - 3566; Viruses - 25; Other Eukaryotes - 1111 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:24160105..24161992 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 31591.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.47 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||||||||||||||
| Length | 281 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MILATTTVSI IVKYAFYVTD MLKEGQWEGK PVYTFYLELV RDLLHLSMYL CFFLMIFMNY GLPLHLIREL YETFRNFKIR VTDYLRYRKI TSNMNDRFPD 101: ATPEELSSND ATCIICREEM TSAKKLVCGH LFHVHCLRSW LERQNTCPTC RALVVPAENA TSTASGNRGP HQESLQQGTG TSSSDGQGSS VSAAASENMS 201: RHEARFQAAA SAASIYGRSI VYPSSANTLV WSQGNSLLPQ TEVEAQRRFL ESQIEVLTNQ LRLLEKPTTV DTKGKSVADT A |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)