suba logo
AT1G63230.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 0.991
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G63630.1); Has 57300 Blast hits to 14267 proteins in 286 species: Archae - 3; Bacteria - 43; Metazoa - 749; Fungi - 672; Plants - 54190; Viruses - 0; Other Eukaryotes - 1643 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:BT028924EMBL:CP002684
EnsemblPlants:AT1G63230EnsemblPlants:AT1G63230.1entrez:842628Gene3D:1.25.40.10
GeneID:842628Gramene:AT1G63230.1hmmpanther:PTHR24015InterPro:IPR002885
InterPro:IPR011990KEGG:ath:AT1G63230OMA:FTEMHDKPfam:PF01535
Pfam:PF12854Pfam:PF13041Pfscan:PS51375PhylomeDB:Q0IGJ6
PROSITE:PS51375Proteomes:UP000006548RefSeq:NP_176512.2SMR:Q0IGJ6
STRING:3702.AT1G63230.1TAIR:AT1G63230TIGRfam:TIGR00756TIGRFAMs:TIGR00756
UniGene:At.24672UniGene:At.49484UniProt:Q0IGJ6
Coordinates (TAIR10) chr1:+:23451144..23452201
Molecular Weight (calculated) 36123.70 Da
IEP (calculated) 5.38
GRAVY (calculated) -0.10
Length 323 amino acids
Sequence (TAIR10)
(BLAST)
001: MVETGCRPDV VTFTTLMNGL CCEGRVLQAL ALVDRMVEEG HQPYGTIING LCKMGDTESA LNLLSKMEET HIKAHVVIYN AIIDRLCKDG HHIHAQNLFT
101: EMHDKGIFPD VITYSGMIDS FCRSGRWTDA EQLLRDMIER QINPDVVTFS ALINALVKEG KVSEAEEIYG DMLRRGIFPT TITYNSMIDG FCKQDRLNDA
201: KRMLDSMASK SCSPDVVTFS TLINGYCKAK RVDNGMEIFC EMHRRGIVAN TVTYTTLIHG FCQVGDLDAA QDLLNVMISS GVAPNYITFQ SMLASLCSKK
301: ELRKAFAILE DLQKSEGHHL EDE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)