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AT1G12300.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G12775.1); Has 69404 Blast hits to 15469 proteins in 318 species: Archae - 6; Bacteria - 74; Metazoa - 1057; Fungi - 1243; Plants - 64555; Viruses - 0; Other Eukaryotes - 2469 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC025416EMBL:AK230459
EMBL:CP002684EnsemblPlants:AT1G12300EnsemblPlants:AT1G12300.1entrez:837784
Gene3D:1.25.40.10GeneID:837784GO:GO:0005739Gramene:AT1G12300.1
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF416HOGENOM:HOG000015176InParanoid:Q0WKV3
InterPro:IPR002885InterPro:IPR011990iPTMnet:Q0WKV3KEGG:ath:AT1G12300
OMA:LMIRIRIPaxDb:Q0WKV3Pfam:PF01535Pfam:PF12854
Pfam:PF13041Pfam:PF13812Pfam:Q0WKV3Pfscan:PS51375
PhylomeDB:Q0WKV3PIR:A86258PRIDE:Q0WKV3PRO:PR:Q0WKV3
PROSITE:PS51375ProteinModelPortal:Q0WKV3Proteomes:UP000006548RefSeq:NP_172694.1
SMR:Q0WKV3STRING:3702.AT1G12300.1SUPFAM:SSF81901TAIR:AT1G12300
TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.42081UniProt:Q0WKV3
Coordinates (TAIR10) chr1:-:4184163..4186076
Molecular Weight (calculated) 71482.20 Da
IEP (calculated) 7.73
GRAVY (calculated) 0.01
Length 637 amino acids
Sequence (TAIR10)
(BLAST)
001: MVKLMIRRLS SQVSKFVQPR LLETGTLRIA LINCPNELSF CCERGFSAFS DRNLSYRERL RSGLVDIKAD DAIDLFRDMI HSRPLPTVID FSRLFSAIAK
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)