AT1G61050.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.428 plasma membrane 0.422 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : alpha 1,4-glycosyltransferase family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
alpha 1,4-glycosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi stack; CONTAINS InterPro DOMAIN/s: Alpha 1,4-glycosyltransferase conserved region (InterPro:IPR007652), Glycosyltransferase, DXD sugar-binding region (InterPro:IPR007577); BEST Arabidopsis thaliana protein match is: alpha 1,4-glycosyltransferase family protein (TAIR:AT5G01250.1); Has 493 Blast hits to 489 proteins in 121 species: Archae - 2; Bacteria - 96; Metazoa - 240; Fungi - 20; Plants - 92; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:22486736..22488043 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49968.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.72 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.12 | ||||||||||||||||||||||||||||||||||||
| Length | 435 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEQSRRTEQV LLVQRLKRLI VSFVFCLPMS LLGLLLMLLL IYNSFSVFSL HLVPNQPIQS TLSPTHLQIL HHQTSTSSSV SDSSLLLVVK ETSLGFIQKQ 101: NVSSTRIEKK TRRFKRSTEL TPAITQRLQV KSRQRFQTRV KSLLSKSSCE SLFFMTWISS IESFGDRERF TIESLFKFHP NGCLILVSNS FDCDRGTLIL 201: KPFTDKGLKV LPIKPDFAYI FKDTSAEKWF ERLKKGTLSP GVIPLEQNLS NLLRLVLLYK YGGIYLDTDV IILKSLSNLH NVIGAQTVDP VTKKWSRLNN 301: AVLIFDKNHP LLKRFIDEFS RTFNGNKWGH NGPYLVSRVI TRIKISSSSD LGFSVLPPSA FYPVDWTRIK GFYRAPTNES DAWLRKRLTH LRKNTFAVHL 401: WNRESKKLRI EEGSIIHQLM SHSCIFCNSS SLHLS |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)