AT1G33960.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.710 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Identified as a gene that is induced by avirulence gene avrRpt2 and RPS2 after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2 | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
AVRRPT2-INDUCED GENE 1 (AIG1); FUNCTIONS IN: GTP binding; INVOLVED IN: response to bacterium; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: AIG1 (InterPro:IPR006703); BEST Arabidopsis thaliana protein match is: Avirulence induced gene (AIG1) family protein (TAIR:AT1G33950.1); Has 4495 Blast hits to 3349 proteins in 353 species: Archae - 20; Bacteria - 338; Metazoa - 1675; Fungi - 168; Plants - 255; Viruses - 14; Other Eukaryotes - 2025 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:12346555..12348184 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 40072.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.15 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.53 | ||||||||||||||||||||||||||||||||||||
| Length | 353 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MANDQKNSES FPAKEDHKKD DAAAPAEVDH KDEFSASQPH PVENIVLVGR TGNGKSATGN SIVRSKVFKS KTKSSGVTME CHAVKAVTPE GPILNVIDTP 101: GLFDLSVSAE FIGKEIVKCL TLADGGLHAV LLVLSVRTRI SQEEEMVLST LQVLFGSKIV DYLIVVFTGG DVLEDDGMTL EDYLGDNMPD FLKRVLILCG 201: QRMILFDNKT KDDEKKTKQV HELLKLIDLV RKQNNNIPYT DEMYHMIKEE NERHKKEQEE LESKGHSEEQ LAALMKELQI MNERNLKAMA EMMEKNMKIA 301: MEAQEKLFEQ REKAQEMSYQ QKMEMQEKLK QMEGRMRAEM EAQMLSRQQC SIL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)