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AT1G31790.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G24000.1); Has 20232 Blast hits to 7081 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20190; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC079041EMBL:BT026440
EMBL:CP002684EnsemblPlants:AT1G31790EnsemblPlants:AT1G31790.1entrez:840066
GeneID:840066Genevisible:Q9C6R9Gramene:AT1G31790.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF562HOGENOM:HOG000115669InParanoid:Q9C6R9InterPro:IPR002885
KEGG:ath:AT1G31790OMA:SARENDQPaxDb:Q9C6R9Pfam:PF01535
Pfam:Q9C6R9Pfscan:PS51375PhylomeDB:Q9C6R9PIR:E86441
PRIDE:Q9C6R9PRO:PR:Q9C6R9PROSITE:PS51375ProteinModelPortal:Q9C6R9
Proteomes:UP000006548RefSeq:NP_174459.1STRING:3702.AT1G31790.1TAIR:AT1G31790
TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.23773UniGene:At.69995
UniProt:Q9C6R9
Coordinates (TAIR10) chr1:-:11394744..11395973
Molecular Weight (calculated) 46256.90 Da
IEP (calculated) 7.88
GRAVY (calculated) -0.21
Length 409 amino acids
Sequence (TAIR10)
(BLAST)
001: MKTLELALPP SPPSLVPSFN YNSTARSVGN DVRTNFDVQL FLRKPKHQKS EPVVVIQQPQ IQPQNPSSRC STSDILRLMD SLSLPGNEDI YSCLAKESAR
101: ENDQRGAHEL QVHIMKSSIR PTITFINRLL LMHVSCGRLD ITRQMFDRMP HRDFHSWAIV FLGCIEMGDY EDAAFLFVSM LKHSQKGAFK IPSWILGCVL
201: KACAMIRDFE LGKQVHALCH KLGFIDEEDS YLSGSLIRFY GEFRCLEDAN LVLHQLSNAN TVAWAAKVTN DYREGEFQEV IRDFIEMGNH GIKKNVSVFS
301: NVLKACSWVS DGGRSGQQVH ANAIKLGFES DCLIRCRLIE MYGKYGKVKD AEKVFKSSKD ETSVSCWNAM VASYMQNGIY IEAIKLLYQM KATGIKAHDT
401: LLNEAHLQM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)