AT1G30410.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.995 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : multidrug resistance-associated protein 13 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
member of MRP subfamily | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
multidrug resistance-associated protein 13 (MRP13); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: multidrug resistance-associated protein 12 (TAIR:AT1G30420.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:10739357..10747017 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 164572.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.92 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.12 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1468 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MGFEALNWYC KPVADGFWEK AVDGAFGAYT PCAIDSLVML VSHFVLLGLL ACYCVVEPVL RLVMGISLFD MDEETDFPPF EVASLMVEAF AWFSMLVLIG 0101: LETKQYVKEF RWYVRFGVLY VLVADAVLLD LVLPLKNSIN RTALYLFISS RCSQALFGIL LLIYIPELDP YPGYHIVNNE PLDNVEYDAL RGGEHICPER 0201: HASIFSRIYF GWITPLMQLG YRKPITEKDV WQLDKWDQTE TLIKRFQRCW TEESRRPKPW LLRALNNSLG GRFWLAGIFK VTRIGNDLSQ FVGPVILSHL 0301: LRSMQEGDPA WVGYVYAFII FVGVTLGVLC EAQYFQNVWR VGFRLRSTLV AAIFHKSLRL THEARKNFAS GKVTNMITTD ANALQQISQQ LHGLWSAPFR 0401: IIVSMILLYQ QLGVASLFGS LILFLLIPLQ TLIISKMRKL TKEGLQWTDK RVGITNEILS SMDTVKCYAW EKSFESRIQG IRNEELSWFR KAQLLSAFNS 0501: FILNSIPVVV TVVSFGVFVL LGGDLTPARA FTSLSLFAVL RFPLNMLPNL LSQVVNANVS LQRIEELLLS EERILAQNPP LQPGTPAISI KNGYFSWDSK 0601: TTKPTLSDIN LEIPVGTLVA IVGGTGEGKT SLISAMLGEL SHAETTSVVI RGSVAYVPQV SWIFNATVRE NILFGSDFES ERYWRAIDAT ALQHDLDLLP 0701: GRDLTEIGER GVNISGGQKQ RVSMARAVYS NSDVYIFDDP LSALDAHVAH QVFDSCMKDE LRGKTRVLVT NQLHFLPLMD KIILVSEGMI KEEGTFVELS 0801: KSGILFKKLM ENAGKMDATQ EVNTNDENIL KLGPTVTVDV SERNLGSTKQ GKRRRSVLIK QEERETGIIS WNVLMRYKEA VGGLWVVMIL LACYLATEVL 0901: RVSSSTWLSI WTDQSTSKNY SPGFYIVVYA LLGFGQVAVT FTNSFWLITS SLHAARRLHD AMLSSILRAP MLFFHTNPTG RVINRFSKDI GDIDRNVANL 1001: MNMFMNQLWQ LLSTFALIGT VSTISLWAIM PLLILFYAAY LYYQSTSREV RRLDSVTRSP IYAQFGEALN GLSSIRAYKA YDRMAKINGK SMDNNIRFTL 1101: ANTSSNRWLT IRLETLGGVM IWLTATFAVL QNGNTNNQAG FASTMGLLLS YTLNITSLLS GVLRQASRAE NSLNSVERVG NYIDLPSEAT DIIENNRPVC 1201: GWPSGGSIKF EDVHLRYRPG LPPVLHGLTF FVSPSEKVGV VGRTGAGKSS MLNALFRIVE VEKGRIMIDD CDVAKFGLTD VRRVLSIIPQ SPVLFSGTVR 1301: FNIDPFSEHN DAGLWEALHR AHIKDVISRN PFGLDAEVCE GGENFSVGQR QLLSLARALL RRSKILVLDE ATASVDVRTD SLIQRTIREE FKSCTMLVIA 1401: HRLNTIIDCD KILVLSSGQV LEYDSPQELL SRDTSAFFRM VHSTGPANAQ YLSNLVFERR ENGMSVGG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)