AT3G10010.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : demeter-like 2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein with DNA glycosylase activity that is involved in maintaining methylation marks. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
demeter-like 2 (DML2); FUNCTIONS IN: 4 iron, 4 sulfur cluster binding, catalytic activity, endonuclease activity; INVOLVED IN: DNA repair, base-excision repair; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Endonuclease III-like, iron-sulphur cluster loop motif (InterPro:IPR003651), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: demeter-like 1 (TAIR:AT2G36490.1); Has 3292 Blast hits to 3211 proteins in 1332 species: Archae - 246; Bacteria - 2331; Metazoa - 80; Fungi - 82; Plants - 273; Viruses - 0; Other Eukaryotes - 280 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:3081999..3088195 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 151484.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.62 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.74 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1332 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MEVEGEVREK EARVKGRQPE TEVLHGLPQE QSIFNNMQHN HQPDSDRRRL SLENLPGLYN MSCTQLLALA NATVATGSSI GASSSSLSSQ HPTDSWINSW 0101: KMDSNPWTLS KMQKQQYDVS TPQKFLCDLN LTPEELVSTS TQRTEPESPQ ITLKTPGKSL SETDHEPHDR IKKSVLGTGS PAAVKKRKIA RNDEKSQLET 0201: PTLKRKKIRP KVVREGKTKK ASSKAGIKKS SIAATATKTS EESNYVRPKR LTRRSIRFDF DLQEEDEEFC GIDFTSAGHV EGSSGEENLT DTTLGMFGHV 0301: PKGRRGQRRS NGFKKTDNDC LSSMLSLVNT GPGSFMESEE DRPSDSQISL GRQRSIMATR PRNFRSLKKL LQRIIPSKRD RKGCKLPRGL PKLTVASKLQ 0401: LKVFRKKRSQ RNRVASQFNA RILDLQWRRQ NPTGTSLADI WERSLTIDAI TKLFEELDIN KEGLCLPHNR ETALILYKKS YEEQKAIVKY SKKQKPKVQL 0501: DPETSRVWKL LMSSIDCDGV DGSDEEKRKW WEEERNMFHG RANSFIARMR VVQGNRTFSP WKGSVVDSVV GVFLTQNVAD HSSSSAYMDL AAEFPVEWNF 0601: NKGSCHEEWG SSVTQETILN LDPRTGVSTP RIRNPTRVII EEIDDDENDI DAVCSQESSK TSDSSITSAD QSKTMLLDPF NTVLMNEQVD SQMVKGKGHI 0701: PYTDDLNDLS QGISMVSSAS THCELNLNEV PPEVELCSHQ QDPESTIQTQ DQQESTRTED VKKNRKKPTT SKPKKKSKES AKSTQKKSVD WDSLRKEAES 0801: GGRKRERTER TMDTVDWDAL RCTDVHKIAN IIIKRGMNNM LAERIKAFLN RLVKKHGSID LEWLRDVPPD KAKEYLLSIN GLGLKSVECV RLLSLHQIAF 0901: PVDTNVGRIA VRLGWVPLQP LPDELQMHLL ELYPVLESVQ KYLWPRLCKL DQKTLYELHY HMITFGKVFC TKVKPNCNAC PMKAECRHYS SARASARLAL 1001: PEPEESDRTS VMIHERRSKR KPVVVNFRPS LFLYQEKEQE AQRSQNCEPI IEEPASPEPE YIEHDIEDYP RDKNNVGTSE DPWENKDVIP TIILNKEAGT 1101: SHDLVVNKEA GTSHDLVVLS TYAAAIPRRK LKIKEKLRTE HHVFELPDHH SILEGFERRE AEDIVPYLLA IWTPGETVNS IQPPKQRCAL FESNNTLCNE 1201: NKCFQCNKTR EEESQTVRGT ILIPCRTAMR GGFPLNGTYF QTNEVFADHD SSINPIDVPT ELIWDLKRRV AYLGSSVSSI CKGLSVEAIK YNFQEGYVCV 1301: RGFDRENRKP KSLVKRLHCS HVAIRTKEKT EE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)