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AT1G28470.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAC domain containing protein 10
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAC domain containing protein 10 (NAC010); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 73 (TAIR:AT4G28500.1); Has 2334 Blast hits to 2329 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2334; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DNASU:839747eggNOG:ENOG410JSEWeggNOG:ENOG41108VGEMBL:AC010155
EMBL:AK118170EMBL:AY086476EMBL:CP002684EnsemblPlants:AT1G28470
EnsemblPlants:AT1G28470.1entrez:839747GeneID:839747Genevisible:F4HY61
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0045893GO:GO:2000652Gramene:AT1G28470.1hmmpanther:PTHR31079
hmmpanther:PTHR31079:SF5InParanoid:F4HY61InterPro:IPR003441KEGG:ath:AT1G28470
OMA:YEHGGKSPaxDb:F4HY61Pfam:F4HY61Pfam:PF02365
Pfscan:PS51005PRIDE:F4HY61PRO:PR:F4HY61PROSITE:PS51005
ProteinModelPortal:F4HY61Proteomes:UP000006548RefSeq:NP_564309.1SMR:F4HY61
STRING:3702.AT1G28470.1SUPFAM:SSF101941TAIR:AT1G28470tair10-symbols:ANAC010
tair10-symbols:NAC010tair10-symbols:SND3UniGene:At.23603UniProt:F4HY61
Coordinates (TAIR10) chr1:+:10010259..10011867
Molecular Weight (calculated) 35500.50 Da
IEP (calculated) 7.62
GRAVY (calculated) -0.94
Length 314 amino acids
Sequence (TAIR10)
(BLAST)
001: MSWCDGSDDN YDLNLERVSN TDHPSVQLKD QSQSCVTSRP DSKISAETPI TTCPSCGHKL HHHQDDQVGS IKDLPSLPAG VKFDPSDKEI LMHLEAKVSS
101: DKRKLHPLID EFIPTLEGEN GICYTHPEKL PGVSKDGQVR HFFHRPSKAY TTGTRKRRKV STDEEGHETR WHKTGKTRPV LSQSGETGFK KILVLYTNYG
201: RQKKPEKTNW VMHQYHLGSS EDEKDGEPVL SKVFYQTQPR QCGSMEPKPK NLVNLNRFSY ENIQAGFGYE HGGKSEETTQ VIRELVVREG DGSCSFLSFT
301: CDASKGKESF MKNQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)