AT1G26410.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.891 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : FAD-binding Berberine family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT1G26420.1); Has 4489 Blast hits to 4292 proteins in 637 species: Archae - 40; Bacteria - 1906; Metazoa - 5; Fungi - 1692; Plants - 699; Viruses - 0; Other Eukaryotes - 147 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:9138774..9140432 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61488.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.83 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.13 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 552 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKEAFVFLLC LTNKFPKKFN SCSKKKETLY VLGLVLLVSF IEAPVTKPNF GKFIECLRDR TTPENPITDV ISIADNSTTF LSSYVSYTKN KRFSSPNFKK 101: LLAIIAAKHV SHVQATVVCA KSNGIQLRIR SGGHDNEGFS YMSSVPFVIL DMHNLRSIDV NLSRKNAWVQ AGATLGELYV KINEASQTLA FPAGVCPTVG 201: AGGHISGGGF GNLMRKFGIT VDHVIDAQII DVNGKLLNRA AMGEDLFWAI RGGGSSFGVI LSWKINLVEV PKILTVFKVN KTLEQGGTDI LYKWQLVANK 301: LPDSLFITAW PRTVNGPKPG ERTVAVVFYA QFLGPTDKLM EIMDQSFPEL GLGREDCHEM SWLNTTLFWA NYPAGTPKSI LLDRPPTNSV SFKSKSDFVK 401: KPIPKKGLEK LWKTMFKFNS SVSLQFNPYG GVMDRIPATA TAFPHRKGNL FKVQYSTMWF DANATESSLA MMNELFEVAE PYVSSNPREA FFNFRDIDIG 501: SNPSGETNVD EAKIYGSKYF LGNLKRLMDV KAKYDPDNFF KNEQSIPPVR VK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)