AT1G01690.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : putative recombination initiation defects 3 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a novel plant-specific protein that is involved in meiotic double strand break formation. | ||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
putative recombination initiation defects 3 (PRD3); Has 279 Blast hits to 273 proteins in 87 species: Archae - 2; Bacteria - 106; Metazoa - 105; Fungi - 5; Plants - 32; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:249242..252221 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50739.40 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 10.22 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.81 | ||||||||||||||||||||||||||||
| Length | 449 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKMNINKACD LKSISVFPPN LRRSAEPQAS QQLRSQQSQQ SFSQGPSSSQ RGCGGFSQMT QSSIDELLIN DQRFSSQERD LSLKKVSSCL PPINHKREDS 101: QLVASRSSSG LSRRWSSASI GESKSQISEE LEQRFGMMET SLSRFGMMLD SIQSDIMQAN RGTKEVFLET ERIQQKLTLQ DTSLQQLRKE QADSKASLDG 201: GVKFILEEFS KDPNQEKLQK ILQMLTTIPE QVETALQKIQ REICHTFTRE IQVLASLRTP EPRVRVPTAP QVKAKENLPE QRGQAAKVLT SLKMPEPRVQ 301: VPAAPQAKEN FPEQRGPVAK SNSFCNTTLK TKQPQFPRNP NDASARAVKP YLSPKIQVGC WKTVKPEKSN FKKRATRKPV KSESTRTQFE QCSVVIDSDE 401: EDIDGGFSCL INENTRGTNF EWDAEKETER ILRTARRTKR KFGNPIIIN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)