suba logo
AT5G67560.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
golgi 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:17151019 (2007): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ADP-ribosylation factor-like A1D
Curator
Summary (TAIR10)
A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.
Computational
Description (TAIR10)
ADP-ribosylation factor-like A1D (ARLA1D); FUNCTIONS IN: GTP binding; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ADP-ribosylation factor-like A1C (TAIR:AT3G49870.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNUKeggNOG:KOG0075EMBL:AY054524EMBL:AY064616EMBL:AY087487EMBL:CP002688EnsemblPlants:AT5G67560
EnsemblPlants:AT5G67560.1entrez:836892Gene3D:3.40.50.300GeneID:836892GO:GO:0005525GO:GO:0005773GO:GO:0005774
GO:GO:0007264GO:GO:0009506Gramene:AT5G67560.1hmmpanther:PTHR11711hmmpanther:PTHR11711:SF178HOGENOM:HOG000163692InterPro:IPR005225
InterPro:IPR006689InterPro:IPR024156InterPro:IPR027417KEGG:ath:AT5G67560KO:K07955OMA:IAHSKSQPfam:PF00025
Pfscan:PS51417PhylomeDB:Q93Y31PRINTS:PR00328PROSITE:PS51417Proteomes:UP000006548RefSeq:NP_569051.1SMR:Q93Y31
STRING:3702.AT5G67560.1SUPFAM:SSF52540TAIR:AT5G67560tair10-symbols:ARLA1Dtair10-symbols:ATARLA1DTIGRfam:TIGR00231TIGRFAMs:TIGR00231
UniGene:At.7634UniProt:Q93Y31
Coordinates (TAIR10) chr5:+:26950579..26951913
Molecular Weight (calculated) 20404.80 Da
IEP (calculated) 7.93
GRAVY (calculated) -0.05
Length 184 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLWDALLNW LRSLFFKQEM ELSLIGLQNA GKTSLVNVVA TGGYSEDMIP TVGFNMRKVT KGSVTIKLWD LGGQPRFRSM WERYCRSVSA IVYVVDAADP
101: DNLSVSKSEL HDLLSKTSLN GIPLLVLGNK IDKPGALSKE ALTDEMGLKS LTDREVCCFM ISCKNSTNID QVIDWLVKHS KSSN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)