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AT5G61600.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ethylene response factor 104
Curator
Summary (TAIR10)
encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.
Computational
Description (TAIR10)
ethylene response factor 104 (ERF104); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G51190.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:21525DIP:DIP-48849NeggNOG:ENOG410JSEAeggNOG:ENOG41108W0
EMBL:AB012239EMBL:AF360149EMBL:AY054228EMBL:AY088694
EMBL:AY142636EMBL:CP002688EnsemblPlants:AT5G61600EnsemblPlants:AT5G61600.1
entrez:836281Gene3D:3.30.730.10GeneID:836281Genevisible:Q9FKG1
GO:GO:0001944GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0009873GO:GO:0044212GO:GO:0045893GO:GO:0050832
GO:GO:0051301Gramene:AT5G61600.1hmmpanther:PTHR31677hmmpanther:PTHR31677:SF8
HOGENOM:HOG000272710InParanoid:Q9FKG1IntAct:Q9FKG1InterPro:IPR001471
InterPro:IPR016177KEGG:ath:AT5G61600KO:K09286OMA:FWDVGAG
PaxDb:Q9FKG1Pfam:PF00847Pfam:Q9FKG1Pfscan:PS51032
PhylomeDB:Q9FKG1PRINTS:PR00367PRO:PR:Q9FKG1PROSITE:PS51032
ProteinModelPortal:Q9FKG1Proteomes:UP000006548RefSeq:NP_200968.1SMART:SM00380
SMR:Q9FKG1STRING:3702.AT5G61600.1SUPFAM:SSF54171TAIR:AT5G61600
tair10-symbols:ERF104UniGene:At.47568UniProt:Q9FKG1
Coordinates (TAIR10) chr5:-:24766643..24767368
Molecular Weight (calculated) 26826.40 Da
IEP (calculated) 6.69
GRAVY (calculated) -0.69
Length 241 amino acids
Sequence (TAIR10)
(BLAST)
001: MATKQEALAI DFISQHLLTD FVSMETDHPS LFTNQLHNFH SETGPRTITN QSPKPNSTLN QRKPPLPNLS VSRTVSTKTE KEEEERHYRG VRRRPWGKYA
101: AEIRDPNKKG CRIWLGTYDT AVEAGRAYDQ AAFQLRGRKA ILNFPLDVRV TSETCSGEGV IGLGKRKRDK GSPPEEEKAA RVKVEEEESN TSETTEAEVE
201: PVVPLTPSSW MGFWDVGAGD GIFSIPPLSP TSPNFSVISV T
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)