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AT5G59330.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex, shoot, embryo, sepal, leaf; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: lipid transfer protein 4 (TAIR:AT5G59310.1); Has 543 Blast hits to 543 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 543; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:CP002688EMBL:DQ447095EnsemblPlants:AT5G59330EnsemblPlants:AT5G59330.1
entrez:836052GeneID:836052GO:GO:0006869GO:GO:0008289
Gramene:AT5G59330.1hmmpanther:PTHR33076hmmpanther:PTHR33076:SF11InterPro:IPR000528
InterPro:IPR016140KEGG:ath:AT5G59330PhylomeDB:Q1PDH3PRINTS:PR00382
Proteomes:UP000006548RefSeq:NP_200741.2SMR:Q1PDH3SUPFAM:SSF47699
TAIR:AT5G59330UniGene:At.74490UniProt:Q1PDH3
Coordinates (TAIR10) chr5:+:23931414..23931677
Molecular Weight (calculated) 9282.41 Da
IEP (calculated) 7.17
GRAVY (calculated) 0.57
Length 87 amino acids
Sequence (TAIR10)
(BLAST)
1: MALALRFFIC FVLTVCIVSS VDAEISCGTV VSNLAPCANY LSKGGVVPDL CCEGVEKLNG VAQTMPMPTV HCKGHFWSQP KSSLWSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)