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AT5G54370.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Late embryogenesis abundant (LEA) protein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Late embryogenesis abundant (LEA) protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Root cap (InterPro:IPR009646); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) protein-related (TAIR:AT4G27400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVM4eggNOG:ENOG410YEEUEMBL:AB010695EMBL:AP000380
EMBL:BT023723EMBL:CP002688EnsemblPlants:AT5G54370EnsemblPlants:AT5G54370.1
entrez:835525GeneID:835525Gramene:AT5G54370.1hmmpanther:PTHR31656
hmmpanther:PTHR31656:SF4HOGENOM:HOG000238685InterPro:IPR009646KEGG:ath:AT5G54370
OMA:AGYGIICPfam:PF06830PhylomeDB:Q9FG54Proteomes:UP000006548
RefSeq:NP_200248.1STRING:3702.AT5G54370.1TAIR:AT5G54370TMHMM:TMhelix
UniGene:At.27765UniProt:Q9FG54
Coordinates (TAIR10) chr5:+:22075334..22076567
Molecular Weight (calculated) 37820.90 Da
IEP (calculated) 7.86
GRAVY (calculated) -0.37
Length 337 amino acids
Sequence (TAIR10)
(BLAST)
001: MEISKTLLLV ISLVAATCFL QAKAAGVYCS NPYTRCYRKY IRCPEECPSK TAMNSKNKVC YADCDRPTCK SQCRMRKPNC NRPGSACYDP RFIGGDGIVF
101: YFHGKSNEEF SLVSDSDLQI NGRFIGHRPA GRARDFTWIQ ALGFLFNSNK FSLEAAKTAS WDNEIDHLKF SYDGQDLSVP EETLSTWYSP NKDIKIERVS
201: MRNSVIVTIK DKAEIMINVV PVTKEDDRIH SYKVPSDDCF AHLEVQFRFF NLSPKVDGIL GRTYRPDFQN PAKPGVAMPV VGGEDSFKTS SLLSNDCKTC
301: IFSESQAEID SVKSEIEYAT LDCTRGASSG YGIVCRK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)