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AT5G20570.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RING-box 1
Curator
Summary (TAIR10)
Encodes a ring-box 1 like protein and component of the SCF ubiquitinization complex mediating auxin responses. Forms a E3 ubiquitin ligase complex with CUL3A and At1g21780.1 a BTB domain protein.
Computational
Description (TAIR10)
RING-box 1 (RBX1); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G42830.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:17454EMBL:AF296833EMBL:AK118181EMBL:AY052401
EMBL:AY072430EMBL:AY086913EMBL:AY114719EMBL:CP002688
EnsemblPlants:AT5G20570EnsemblPlants:AT5G20570.1entrez:832179ExpressionAtlas:Q940X7
Gene3D:3.30.40.10GeneID:832179Genevisible:Q940X7GO:GO:0005634
GO:GO:0005737GO:GO:0008270GO:GO:0016567hmmpanther:PTHR11210
hmmpanther:PTHR11210:SF21HOGENOM:HOG000171951InParanoid:Q940X7IntAct:Q940X7
InterPro:IPR001841InterPro:IPR013083InterPro:IPR024766Pfam:PF12678
Pfam:Q940X7Pfscan:PS50089PhylomeDB:Q940X7PRIDE:Q940X7
PRO:PR:Q940X7PROSITE:PS50089ProteinModelPortal:Q940X7Proteomes:UP000006548
Reactome:R-ATH-110314Reactome:R-ATH-5632684Reactome:R-ATH-5696394Reactome:R-ATH-5696395
Reactome:R-ATH-5696400Reactome:R-ATH-6781823Reactome:R-ATH-6782135Reactome:R-ATH-6782210
RefSeq:NP_568396.1SMR:Q940X7SUPFAM:SSF57850TAIR:AT5G20570
tair10-symbols:ATRBX1tair10-symbols:HRT1tair10-symbols:RBX1tair10-symbols:ROC1
UniGene:At.46369UniGene:At.69564UniPathway:UPA00143UniProt:Q940X7
Coordinates (TAIR10) chr5:-:6956905..6958221
Molecular Weight (calculated) 13238.60 Da
IEP (calculated) 6.64
GRAVY (calculated) -0.15
Length 118 amino acids
Sequence (TAIR10)
(BLAST)
001: MATLDSDVTM IPAGEASSSV AASSSNKKAK RFEIKKWSAV ALWAWDIVVD NCAICRNHIM DLCIECQANQ ASATSEECTV AWGVCNHAFH FHCISRWLKT
101: RQVCPLDNSE WEFQKYGH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)