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AT5G17460.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.590
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: mitochondrion; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
EMBL:AY091431EMBL:CP002688EnsemblPlants:AT5G17460EnsemblPlants:AT5G17460.1
entrez:831612ExpressionAtlas:Q949X1GeneID:831612Gramene:AT5G17460.1
hmmpanther:PTHR38393hmmpanther:PTHR38393:SF1HOGENOM:HOG000237456ncoils:Coil
PhylomeDB:Q949X1Proteomes:UP000006548RefSeq:NP_568348.1TAIR:AT5G17460
UniGene:At.19143UniProt:Q949X1
Coordinates (TAIR10) chr5:-:5757582..5758867
Molecular Weight (calculated) 35920.90 Da
IEP (calculated) 8.33
GRAVY (calculated) -1.17
Length 309 amino acids
Sequence (TAIR10)
(BLAST)
001: MFARRLSSLF SIVTKRSQSR LLSCPTTSAQ NWVFAEFRQT IQATRFYASG RGKDYNLFGN VKPGDDDFRK TWEKEMEDDD TLWSGSEDES NDKTKQESGR
101: NRLEKEIKKA RQQAKDSTDQ IDGDDSDELY SVWSGSDEEK TLWTGDEGDD DDDIPTEPRP NEASDKYLDK LFEFEEKPKY RTISELLKSE NEPEELSPGK
201: KARKLAVENA LKKLNKGPDG RYTNVWEVMS DVDILIGAFE NIISGPEYEE LRKGGPKRLN MQFFKDIQTR MRDPNFKFTP EIKLKPKSKL VPRKKWQKAQ
301: SRIRKAKKR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)