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AT5G13190.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.989
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: LPS-induced tumor necrosis factor alpha factor (InterPro:IPR006629); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IX1PeggNOG:ENOG4111VPQEMBL:AY034946EMBL:AY062988
EMBL:AY088302EMBL:CP002688EnsemblPlants:AT5G13190EnsemblPlants:AT5G13190.1
entrez:831158GeneID:831158GO:GO:0005886GO:GO:0016021
GO:GO:0034051Gramene:AT5G13190.1hmmpanther:PTHR23292HOGENOM:HOG000029083
InterPro:IPR006629KEGG:ath:AT5G13190OMA:GHYYYAPPfam:PF10601
Proteomes:UP000006548RefSeq:NP_568286.1SMART:SM00714STRING:3702.AT5G13190.1
TAIR:AT5G13190TMHMM:TMhelixUniGene:At.5000UniProt:Q94CD4
Coordinates (TAIR10) chr5:-:4204987..4206205
Molecular Weight (calculated) 14560.70 Da
IEP (calculated) 7.12
GRAVY (calculated) -0.04
Length 134 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKEGTTVIG VPYYAGQNPY QAGIVPPNAI YGDPLGAPIQ QTIYRDTPAP FNCLYCGNTG LTNLRSKPGV AAVVACMMPF MLGFCFLCPS MDCLWNKQHH
101: CPQCGNKVAD FEKSDPCLVM DPPQWKQPSF ALPA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)