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AT5G11080.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.985
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Ubiquitin-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ubiquitin-like superfamily protein; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT5G25270.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EMBL:AL391222EMBL:CP002688EMBL:DQ056677EnsemblPlants:AT5G11080
EnsemblPlants:AT5G11080.1entrez:830975ExpressionAtlas:Q9FY57GeneID:830975
Gramene:AT5G11080.1hmmpanther:PTHR15204HOGENOM:HOG000152587InterPro:IPR000626
InterPro:IPR029071Pfam:PF00240Pfscan:PS50053PhylomeDB:Q9FY57
PIR:T51797PROSITE:PS50053Proteomes:UP000006548RefSeq:NP_196669.1
SMART:SM00213SMR:Q9FY57SUPFAM:SSF54236TAIR:AT5G11080
UniGene:At.54809UniProt:Q9FY57
Coordinates (TAIR10) chr5:-:3517449..3519449
Molecular Weight (calculated) 39708.70 Da
IEP (calculated) 7.99
GRAVY (calculated) -0.55
Length 352 amino acids
Sequence (TAIR10)
(BLAST)
001: MGDTHDFTDL IRIKIKILHS TTHTLSVERT IPVRDLKQDI CYYCGVSPER QPRLLFRGRV LKNDQRLSDY HVEEGHTLYL VKGSPPIPLF SSNAAANSNL
101: GRGTLTDHSY QLTARGYDTP SVVIPDSITT LSRHLDRIRQ VFATYGNNDD NNWQAPNRSR EDLIARECHW GELAHTTRRL LIGEVAECLS NISMLLVDQV
201: NVTDPSARRL RQERVVESGS LLCHLGSSIL ALGHGTSRIS MGETQDDVGR AVFISPTGQN RLQSHHSWLQ TSIRAGRRIR IISRRRSSRN QQHSDLYFNA
301: SDQNADNTSS PRLTTDEELS DSDSEHEMVN IVSTLNLYYS KAKKEMVGSF GL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)