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AT5G10750.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1336)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1336); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1336) (TAIR:AT5G24990.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFDPeggNOG:ENOG410XQC9EMBL:AL365234EMBL:BT020402
EMBL:BT020482EMBL:CP002688EnsemblPlants:AT5G10750EnsemblPlants:AT5G10750.1
entrez:830942GeneID:830942Gramene:AT5G10750.1hmmpanther:PTHR12136
hmmpanther:PTHR12136:SF38InterPro:IPR009769KEGG:ath:AT5G10750OMA:AEWLLRP
Pfam:PF07059PhylomeDB:Q9LEW4PIR:T50784Proteomes:UP000006548
RefSeq:NP_196636.1STRING:3702.AT5G10750.1TAIR:AT5G10750UniGene:At.43940
UniGene:At.69170UniProt:Q9LEW4
Coordinates (TAIR10) chr5:+:3399072..3399980
Molecular Weight (calculated) 33023.00 Da
IEP (calculated) 8.32
GRAVY (calculated) -0.40
Length 302 amino acids
Sequence (TAIR10)
(BLAST)
001: MSPSKQRHRS STGENKSKPV RSASSSAIPE WITESTNGGS LRRVDPDTGT DGWASPPGDV FSLRSDSYLS KKQKTPAGDY LLSPAGMDWL KSSTKLENAL
101: ARPDNRVAHA LRKAQSRGQS LKSFIFAVNL QIPGKDHHSA VFYFATEEPI PSGSLLHRFI NGDDAFRNQR FKIVNRIVKG PWVVKAAVGN YSACLLGKAL
201: TCNYHRGPNY FEIDVDISSS AIATAILRLA LGYVTSVTID MGFLAEAQTE EELPERLIGA VRVCQMEMSS AFVVDAPPPQ QLPSQPCRTL SSAKVNHDED
301: ED
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)