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AT5G07090.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15821981 (2005): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein S4 (RPS4A) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein S4 (RPS4A) family protein; FUNCTIONS IN: structural constituent of ribosome, protein binding; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S4e, central (InterPro:IPR013845), Ribosomal protein S4e, N-terminal, conserved site (InterPro:IPR018199), RNA-binding S4 (InterPro:IPR002942), KOW (InterPro:IPR005824), Ribosomal protein S4e, N-terminal (InterPro:IPR013843), Ribosomal protein S4e (InterPro:IPR000876); BEST Arabidopsis thaliana protein match is: Ribosomal protein S4 (RPS4A) family protein (TAIR:AT5G58420.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:15879eggNOG:COG1471eggNOG:KOG0378EMBL:AB010697
EMBL:AL163652EMBL:AY050933EMBL:AY070769EMBL:AY079417
EMBL:AY085205EMBL:AY093715EMBL:CP002688EMBL:F20029
EMBL:Z17994EMBL:Z18498EMBL:Z32618EMBL:Z32619
EnsemblPlants:AT5G07090EnsemblPlants:AT5G07090.1entrez:830600ExpressionAtlas:P49204
GeneID:830600Genevisible:P49204GO:GO:0003735GO:GO:0005774
GO:GO:0006412GO:GO:0019843GO:GO:0022626HAMAP:MF_00485
hmmpanther:PTHR11581HOGENOM:HOG000231325InParanoid:P49204IntAct:P49204
InterPro:IPR000876InterPro:IPR002942InterPro:IPR005824InterPro:IPR013843
InterPro:IPR013845InterPro:IPR018199InterPro:IPR032277OMA:WWPIPRK
PANTHER:PTHR11581PaxDb:P49204Pfam:P49204Pfam:PF00467
Pfam:PF00900Pfam:PF01479Pfam:PF08071Pfam:PF16121
Pfscan:PS50889PhylomeDB:P49204PIR:T48480PIRSF:PIRSF002116
PRIDE:P49204PRO:PR:P49204ProDom:PD002667PROSITE:PS00528
PROSITE:PS50889ProteinModelPortal:P49204Proteomes:UP000006548Reactome:R-ATH-156827
Reactome:R-ATH-1799339Reactome:R-ATH-72689Reactome:R-ATH-72695Reactome:R-ATH-72702
Reactome:R-ATH-72706Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_568179.1
scanprosite:PS00528SMART:SM00739SMR:P49204STRING:3702.AT5G07090.1
TAIR:AT5G07090UniGene:At.25091UniGene:At.5040UniProt:P49204
Coordinates (TAIR10) chr5:+:2202410..2203805
Molecular Weight (calculated) 29875.70 Da
IEP (calculated) 10.85
GRAVY (calculated) -0.52
Length 262 amino acids
Sequence (TAIR10)
(BLAST)
001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEENKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLASQQ AA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)