suba logo
AT4G40080.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 0.638
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : ENTH/ANTH/VHS superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ENTH/ANTH/VHS superfamily protein; FUNCTIONS IN: phospholipid binding, binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Epsin-like, N-terminal (InterPro:IPR013809), ANTH (InterPro:IPR011417), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: ENTH/ANTH/VHS superfamily protein (TAIR:AT5G10410.1); Has 479 Blast hits to 479 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 157; Fungi - 0; Plants - 318; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQ90eggNOG:KOG0251EMBL:AL035708EMBL:BT029485
EnsemblPlants:AT4G40080EnsemblPlants:AT4G40080.1entrez:830171ExpressionAtlas:A1A6G6
Gene3D:1.25.40.90GeneID:830171GO:GO:0005543Gramene:AT4G40080.1
hmmpanther:PTHR22951hmmpanther:PTHR22951:SF18InterPro:IPR008942InterPro:IPR011417
InterPro:IPR013809KEGG:ath:AT4G40080OMA:CLSFGDSPaxDb:A1A6G6
Pfam:PF07651Pfam:Q8L936Pfscan:PS50942PhylomeDB:A1A6G6
PRIDE:A1A6G6PRO:PR:Q8L936PROSITE:PS50942ProteinModelPortal:A1A6G6
RefSeq:NP_195718.1SMART:SM00273STRING:3702.AT4G40080.1SUPFAM:SSF48464
TAIR:AT4G40080UniGene:At.27784UniGene:At.49774UniProt:A1A6G6
UniProt:Q8L936
Coordinates (TAIR10) chr4:+:18579371..18580542
Molecular Weight (calculated) 40704.70 Da
IEP (calculated) 8.57
GRAVY (calculated) -0.15
Length 365 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRITSFADL IGRIKDKASQ SKAALVSSNT KSKTLSFHLS VLRATTHDPS TPPGNRHLAV ILSAGTGSRA TASSAVESIM ERLHTTGDAC VALKSLIIIH
101: HIVKHGRFIL QDQLSVFPAS GGRNYLKLSA FRDEKSPLMW ELSSWVRWYA LYLEHLLSTS RIMGFFISST SSTIHKEEYE EMVSSLTNSD LLREIDALVG
201: LLEEACKIPD LPFSGGKSLA DKITQLVGED YVSSINELYT RFNEFKERSN TLSFGDTIEL VCALKRLESC KERLSEICHG NWKRGWIDGF WGLVLEVKGI
301: IGNLEDNYGQ IEKSIVGFGK RDKGYESARF TDRLIIGYSN PVRFSSGRFS NVDRFNFPVS GRVLC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)