suba logo
AT4G36280.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein; FUNCTIONS IN: ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: ATPase-like, ATP-binding domain (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: compromised recognition of TCV 1 (TAIR:AT4G36290.1); Has 498 Blast hits to 482 proteins in 78 species: Archae - 0; Bacteria - 36; Metazoa - 219; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).
Protein Annotations
EC:3.6.-.-eggNOG:NOG252733EMBL:AL022141EMBL:AL161589
EMBL:BT002955EMBL:BT020539EMBL:CP002687EnsemblPlants:AT4G36280
EnsemblPlants:AT4G36280.1entrez:829785Gene3D:3.30.565.10GeneID:829785
GO:GO:0003677GO:GO:0003723GO:GO:0004519GO:GO:0005524
GO:GO:0005634GO:GO:0005768GO:GO:0006281GO:GO:0006282
GO:GO:0009626GO:GO:0016301GO:GO:0016568GO:GO:0016887
GO:GO:0031047GO:GO:0051607GO:GO:0090305GO:GO:1900426
GO:GO:1901672Gramene:AT4G36280.1hmmpanther:PTHR23336hmmpanther:PTHR23336:SF18
HOGENOM:HOG000243790InterPro:IPR003594KEGG:ath:AT4G36280ncoils:Coil
OMA:EGVRRCMPfam:PF13589PhylomeDB:Q5FV35PIR:T04597
ProteinModelPortal:Q5FV35Proteomes:UP000006548RefSeq:NP_195351.2STRING:3702.AT4G36280.1
SUPFAM:SSF55874TAIR:AT4G36280UniGene:At.31335UniProt:Q5FV35
Coordinates (TAIR10) chr4:-:17165513..17169277
Molecular Weight (calculated) 69981.20 Da
IEP (calculated) 7.18
GRAVY (calculated) -0.43
Length 626 amino acids
Sequence (TAIR10)
(BLAST)
001: MPPMAKNAAV TDVVHLDSDS DSDNGVVGGR ESASTIAGAA TMAPRETLEC RSFWKAGDYF VIPNVVTPTA PGMLEHARVH PRFLHSNATS HKWAFGAIAE
101: LLDNAVDEIQ NGATFVKIDK INIVKDNSPA LVFQDDGGGM DPAGLRKCMS LGYSSKKSNT TIGQYGNGFK TSTMRLGADA IVFSRSTRGG TSTQSVGILS
201: YTFLRKTGQD DVTVPMIDID ISKERPQPII YGSPEDWAAN LEILLKWSPF STEDELLQQF EDVGTHGTKV IIYNLWLNDE GIYELSFDDD EEDIRLRDES
301: VNDGKRLHHK ILELRSHISY HLRYSLRAYA SMLYLKKFKN FKIIIRGIPV EQFNIADGFR FPEIIKYKPH TATTEQASTE IKIGFVKEAP KLAICGFNVY
401: HKNRLIRPFW KVTMGGDSTG HGVVGVLEAN FIEPAHDKQD FERSSLFQRL EARLKKIVYS YWYSHCHLLG YHKYQMPADK SKKIAIPDQP PTISTVNPSP
501: LPSDKISQGG PIIREINLSN ATSSRTVAFA SPHLRNSTGL RSNFQPVQLN PQPTAADTGN NLDGKSAGEI RQENLQLFMR CEEYIKKENE TEQTVKSLEK
601: ELEEFKSKCA HLALLVDAKK KEMQQA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)