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AT4G33780.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: short hypocotyl in white light1 (TAIR:AT1G69935.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZVNeggNOG:ENOG410YPQFEMBL:AY086625EMBL:BT001936
EMBL:CP002687EnsemblPlants:AT4G33780EnsemblPlants:AT4G33780.1entrez:829520
GeneID:829520GO:GO:0016021Gramene:AT4G33780.1hmmpanther:PTHR35474
hmmpanther:PTHR35474:SF1HOGENOM:HOG000148663KEGG:ath:AT4G33780OMA:HEEEDRS
PhylomeDB:Q8LCF7Proteomes:UP000006548RefSeq:NP_567935.3TAIR:AT4G33780
TMHMM:TMhelixUniGene:At.19838UniProt:Q8LCF7
Coordinates (TAIR10) chr4:-:16202174..16203617
Molecular Weight (calculated) 23139.60 Da
IEP (calculated) 7.36
GRAVY (calculated) -0.14
Length 203 amino acids
Sequence (TAIR10)
(BLAST)
001: MPFSASISSP SSSVALLRSP LSFFIFTPKT LIFTRTRISG FPYLASRRSR DFINGRDDFA DDTRSWNRKI KPEYGFDEDY DGEEDDDDHE EEDRSLDLLL
101: RFVENVFRKI SKRARKAVRS ILPVSISTKL VGFSVNGVLI LAFLWILKAF LEVACTLGTI VFTSILLIRG LWAGVAYMQE SRNNRINELA DDPRAWNGMQ
201: PVS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)