suba logo
AT4G32140.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.963
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : EamA-like transporter family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
EamA-like transporter family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: EamA-like transporter family (TAIR:AT3G07080.1); Has 1581 Blast hits to 1581 proteins in 473 species: Archae - 40; Bacteria - 583; Metazoa - 277; Fungi - 235; Plants - 87; Viruses - 0; Other Eukaryotes - 359 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0697eggNOG:KOG2765EMBL:AL021636EMBL:AL161580
EMBL:AY057538EMBL:AY113057EMBL:CP002687EnsemblPlants:AT4G32140
EnsemblPlants:AT4G32140.1entrez:829346GeneID:829346GO:GO:0016021
Gramene:AT4G32140.1hmmpanther:PTHR23051hmmpanther:PTHR23051:SF2HOGENOM:HOG000176279
IntAct:O49378InterPro:IPR000620KEGG:ath:AT4G32140KO:K15289
ncoils:CoilOMA:AIFDMELPfam:PF00892PhylomeDB:O49378
PIR:T04631Proteomes:UP000006548RefSeq:NP_194941.1STRING:3702.AT4G32140.1
SUPFAM:0043518TAIR:AT4G32140TMHMM:TMhelixUniGene:At.1877
UniProt:O49378
Coordinates (TAIR10) chr4:-:15523037..15525195
Molecular Weight (calculated) 43404.10 Da
IEP (calculated) 6.53
GRAVY (calculated) 0.40
Length 394 amino acids
Sequence (TAIR10)
(BLAST)
001: MGWRYKAGLF LIGTVVIIWV TSAEVTQDIF TAYKQPFAVT YLGASLMIVY LPVAFLKDWL CRYLDRRSSK SNKIPALTDD SSVELGSPLR HKIIEMGLQG
101: TITKKDSEEH LSSHEEEDER PLIGKVREEV QTLKQRKEIT TKQIAMYGLY LAPIWFVTEY LSNAALARTS VASTTVLSST SGLFTLFIGV FLGQDTLNLS
201: KVVAVFVSMA GVVMTTLGKT WASDESQLNS SLNGERSLMG DLFGLLSAVS YGLFTVLLKK FAGEEGEGVD VQKLFGYIGL FTLVALWWLV WPLTALGIEP
301: KFTIPHSVKV DEVVLANGFI GSVLSDYFWA LSVVWTTPLV ATLGMSLTIP LAMVADMMIH GRHYSAIYIL GSTQVFAGFV IANISDLFSK KLGL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)