suba logo
AT4G26930.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : myb domain protein 97
Curator
Summary (TAIR10)
Encodes a putative transcription factor (MYB97).
Computational
Description (TAIR10)
myb domain protein 97 (MYB97); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 120 (TAIR:AT5G55020.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5147eggNOG:KOG0048EMBL:AF176002EMBL:AL035440
EMBL:AL161566EMBL:CP002687EnsemblPlants:AT4G26930EnsemblPlants:AT4G26930.1
entrez:828800Gene3D:1.10.10.60GeneID:828800GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006355GO:GO:0090406
Gramene:AT4G26930.1hmmpanther:PTHR10641hmmpanther:PTHR10641:SF532InterPro:IPR001005
InterPro:IPR009057InterPro:IPR017930KEGG:ath:AT4G26930KO:K09422
OMA:NTMQDEDPfam:PF00249Pfscan:PS51294PIR:T04816
PROSITE:PS51294Proteomes:UP000006548RefSeq:NP_194423.1SMART:SM00717
SMR:Q9S773STRING:3702.AT4G26930.1SUPFAM:SSF46689TAIR:AT4G26930
tair10-symbols:AtMYB97tair10-symbols:MYB97UniGene:At.2598UniProt:Q9S773
Coordinates (TAIR10) chr4:+:13527770..13529172
Molecular Weight (calculated) 43580.70 Da
IEP (calculated) 5.84
GRAVY (calculated) -0.68
Length 389 amino acids
Sequence (TAIR10)
(BLAST)
001: MIVYGGGASE DGEGGGVVLK KGPWTVAEDE TLAAYVREYG EGNWNSVQKK TWLARCGKSC RLRWANHLRP NLRKGSFTPE EERLIIQLHS QLGNKWARMA
101: AQLPGRTDNE IKNYWNTRLK RFQRQGLPLY PPEYSQNNHQ QQMYPQQPSS PLPSQTPASS FTFPLLQPPS LCPKRCYNTA FSPKASYISS PTNFLVSSPT
201: FLHTHSSLSS YQSTNPVYSM KHELSSNQIP YSASLGVYQV SKFSDNGDCN QNLNTGLHTN TCQLLEDLME EAEALADSFR APKRRQIMAA LEDNNNNNNF
301: FSGGFGHRVS SNSLCSLQGL TPKEDESLQM NTMQDEDITK LLDWGSESEE ISNGQSSVIT TENNLVLDDH QFAFLFPVDD DTNNLPGIC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)