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AT4G18720.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Transcription factor IIS protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transcription factor IIS protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription elongation factor S-IIM (InterPro:IPR017890), Transcription factor IIS, N-terminal (InterPro:IPR017923), Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617), Transcription elongation factor S-II, central domain (InterPro:IPR003618); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G42730.1); Has 634 Blast hits to 606 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 380; Fungi - 44; Plants - 187; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1594eggNOG:KOG1105EMBL:AL035526EMBL:AL161549
EMBL:CP002687EnsemblPlants:AT4G18720EnsemblPlants:AT4G18720.1entrez:827606
Gene3D:1.10.472.30GeneID:827606GO:GO:0003677GO:GO:0005634
GO:GO:0006351GO:GO:0008270Gramene:AT4G18720.1hmmpanther:PTHR11477
HOGENOM:HOG000195015InterPro:IPR003617InterPro:IPR003618InterPro:IPR017923
KEGG:ath:AT4G18720KO:K03145OMA:LYESTHYPfam:PF07500
Pfscan:PS51319Pfscan:PS51321PhylomeDB:Q9SN41PIR:T04864
PROSITE:PS51319PROSITE:PS51321Proteomes:UP000006548RefSeq:NP_193607.1
SMART:SM00509SMART:SM00510SMR:Q9SN41STRING:3702.AT4G18720.1
SUPFAM:0037100SUPFAM:SSF46942TAIR:AT4G18720UniGene:At.22875
UniProt:Q9SN41
Coordinates (TAIR10) chr4:+:10299945..10301228
Molecular Weight (calculated) 30802.20 Da
IEP (calculated) 10.17
GRAVY (calculated) -0.56
Length 266 amino acids
Sequence (TAIR10)
(BLAST)
001: MQKREFMELF EAALRAAKSV KGDENSPEVS RFVDAMNRLK EAPKSLVCDV VCKTSMGQGL EFFIDHKNPK IRSEGRILRD LWMKFFYASG REKSRDNREA
101: AVKIPTHATM KKTGDSKRDK VREILQTSLA KVASEVVDTE MKTRVTACDP WVVAVSVETA MFENLGCFMG PQKAKYRSIL FNMGDSNNPD LRRKVLLGEI
201: SGERLVKMEK EEMGSSWYTN SRRNPLYEST HYTDFRFPQI KAHLWHKVRV FSLFTYILER TKRSFT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)