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AT4G12650.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Predictors External Curations
AmiGO : golgi 16618929
AmiGO : plasma membrane 17151019
AmiGO : vacuole 14760709
TAIR : golgi 16618929
TAIR : plasma membrane 17151019
TAIR : vacuole 14760709
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:25122472 (2014): Golgi Golgi apparatus
  • PMID:24344820 (2014): Golgi trans-Golgi network
  • PMID:24030099 (2013): plasma membrane
  • PMID:22923678 (2012): Golgi
  • PMID:22430844 (2012): Golgi
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:19334764 (2009): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16618929 (2006): Golgi
  • PMID:14760709 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Endomembrane protein 70 protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Endomembrane protein 70 protein family; LOCATED IN: integral to membrane, Golgi apparatus, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: Endomembrane protein 70 protein family (TAIR:AT5G35160.2); Has 1639 Blast hits to 1594 proteins in 317 species: Archae - 0; Bacteria - 7; Metazoa - 635; Fungi - 224; Plants - 501; Viruses - 0; Other Eukaryotes - 272 (source: NCBI BLink).
Protein Annotations
BioGrid:12175eggNOG:ENOG410XPIWeggNOG:KOG1278EMBL:AK175697
EMBL:AK175992EMBL:AK176134EMBL:AL049730EMBL:AL161534
EMBL:CP002687EnsemblPlants:AT4G12650EnsemblPlants:AT4G12650.1entrez:826878
GeneID:826878Genevisible:F4JRE0GO:GO:0000139GO:GO:0005768
GO:GO:0005773GO:GO:0005774GO:GO:0005794GO:GO:0005802
GO:GO:0009506GO:GO:0010008GO:GO:0016021Gramene:AT4G12650.1
hmmpanther:PTHR10766hmmpanther:PTHR10766:SF44HOGENOM:HOG000216679InParanoid:Q9SU21
InterPro:IPR004240KEGG:ath:AT4G12650ncoils:CoilOMA:IQFPVRT
PANTHER:PTHR10766PaxDb:F4JRE0Pfam:F4JRE0Pfam:PF02990
PIR:H85135PRIDE:F4JRE0PRO:PR:F4JRE0ProteinModelPortal:F4JRE0
Proteomes:UP000006548RefSeq:NP_193002.4STRING:3702.AT4G12650.1TAIR:AT4G12650
TMHMM:TMhelixUniGene:At.19904UniProt:F4JRE0
Coordinates (TAIR10) chr4:-:7468207..7470165
Molecular Weight (calculated) 74144.00 Da
IEP (calculated) 6.08
GRAVY (calculated) 0.40
Length 652 amino acids
Sequence (TAIR10)
(BLAST)
001: MFGVYRVFVL LVFVSQLCNG FYLPGSYMHT YSDGDSIFAK VNSLTSIETE LPFSYYSLPY CQPLEGIKKS AENLGELLMG DQIDNSAYRF RMRTNESLYL
101: CTTSPLNEHE VKLLKQRTRE LYQVNMILDN LPALRFAKQN GVTIQWTGYP VGYSPPNSND DYIINHLKFK VLVHEYEGNV MEVIGTGEEG MGVISEADKK
201: KALGYEIVGF EVVPCSVKYD AEKMTKLHMY DPVPSVNCPL ELDKAQIIKE HERITFTYEV EFVKSETRWP SRWDAYLKME GARVHWFSIL NSLMVIFFLA
301: GIVFVIFLRT VRRDLTKYEE LDKEAQAQMN EELSGWKLVV GDVFREPEMS KLLCIMVGDG VRITGMAVVT IVFAALGFMS PASRGMLLTG MIILYLFLGI
401: VAGYAGVRLW RTVKGTSEGW RSLSWSIACF FPGIAFVILT VLNFLLWSSN STGAIPISLY FELLALWFCI SVPLTLFGGF LGTRAEAIQF PVRTNQIPRE
501: IPERKYPSWL LVLGAGTLPF GTLFIELFFI FSSIWLGRFY YVFGFLLIVL LLLVVVCAEV SVVLTYMHLC VEDWRWWWKA FYASGSVALY VFAYSINYLV
601: FDLQSLSGPV SAMLYIGYSL LMAIAIMLAT GTIGFLTSFY FVHYLFSSVK ID
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)