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AT4G10370.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.894
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Cysteine/Histidine-rich C1 domain family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT3G26550.1); Has 1539 Blast hits to 659 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 0; Plants - 1515; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Protein Annotations
EMBL:CP002687EnsemblPlants:AT4G10370EnsemblPlants:AT4G10370.1entrez:826629
GeneID:826629GO:GO:0005622GO:GO:0008270GO:GO:0035556
GO:GO:0047134Gramene:AT4G10370.1hmmpanther:PTHR32410hmmpanther:PTHR32410:SF152
InParanoid:F4JLN1InterPro:IPR001965InterPro:IPR002219InterPro:IPR004146
InterPro:IPR011424KEGG:ath:AT4G10370PaxDb:F4JLN1Pfam:PF03107
Pfam:PF07649Pfscan:PS50081PRIDE:F4JLN1PROSITE:PS50081
ProteinModelPortal:F4JLN1Proteomes:UP000006548RefSeq:NP_192775.2SMART:SM00249
SMR:F4JLN1SUPFAM:SSF57889TAIR:AT4G10370UniGene:At.49683
UniProt:F4JLN1
Coordinates (TAIR10) chr4:-:6423577..6425640
Molecular Weight (calculated) 79370.60 Da
IEP (calculated) 6.68
GRAVY (calculated) -0.37
Length 687 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSVGVFHKV EMDENLYFVY KLTQTDYPTS SGEVLAMDST GDDQPLDQPL FLCPDARIKF HKLKIQREDG DIFDYDFKFH PYISSPHFPS KRSGDQQGES
101: LLDCDEDGIC KLPVVPLFWC NNKESDSREF QCGGCRDSML SASYYACLQC EKKFHKECVE SPLEIKHPTH LFHSLRLYYH PAPEFCICCK TEVFMIFYHC
201: LTCNLSMHPV CAMRKVPFFI DHPKSHPHPL TFFPTQASLV CHFCALIKKL DPTYICTKCV FVIHKGCIGF PHVIRISRHT HRISFTSSLP CGKLSCGVCH
301: QQVDNDYGAY SCKKCDAYFV HSKCALQRHV WDGKDLEEVP EEDDMIDDGE PFKRIADGII LHPFHSHNLH LQTTRAYDEN TYCRGCALPI YEGQFYSCIE
401: SDFILHEHCA NAPRMKRHPL HPHPLTLVVA TRGPGNEEGT FQCDACHRKG TGFFYEHHTD QENIFMLDIH CASIFEPFQY QGHEHPLFLP SEPNKWGRCQ
501: MCTYEYVNLN LNCLECDYIL CFHCATLPYK VRYKHDSHFL KICNGKEAND QSYWCEICEG KIEEGTERAF YNTPKKDTSF YKCNACCTTL HQRCLLGIDT
601: YMKPGETVKD YLSSIKYASE GQSKESITDV QILLNSSPTR PICTRCLCRC PFPIFFKGHN TIFCSWDCVE DSAMRSYQRL LYSFLWG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)