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AT4G09890.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF3511)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF3511); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3511 (InterPro:IPR021899); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3511) (TAIR:AT5G11970.1); Has 187 Blast hits to 187 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 187; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DNASU:826579eggNOG:ENOG410J1PWeggNOG:ENOG410Z0ESEMBL:AL049481
EMBL:AL161516EMBL:BT010814EMBL:BT011288EMBL:CP002687
EnsemblPlants:AT4G09890EnsemblPlants:AT4G09890.1entrez:826579GeneID:826579
Gramene:AT4G09890.1hmmpanther:PTHR33193hmmpanther:PTHR33193:SF9HOGENOM:HOG000237973
InterPro:IPR021899KEGG:ath:AT4G09890OMA:NVFTMEGPfam:PF12023
PhylomeDB:Q9T0E8PIR:T03993Proteomes:UP000006548RefSeq:NP_192727.1
TAIR:AT4G09890UniGene:At.48838UniProt:Q9T0E8
Coordinates (TAIR10) chr4:+:6218501..6218764
Molecular Weight (calculated) 10167.80 Da
IEP (calculated) 9.82
GRAVY (calculated) -1.15
Length 87 amino acids
Sequence (TAIR10)
(BLAST)
1: MMKGSKSYTE YSSSFSTDEF GYDQNRSNSY NFNGPCINTD PEMKRKKRVA SYNLFATEEK LKSTLKNSFK WIKNKFSGDD NSIRYNV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)