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AT4G04940.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30961429 (2019): nucleus
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:21433285 (2011): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : transducin family protein / WD-40 repeat family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: rRNA processing; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), Small-subunit processome, Utp21 (InterPro:IPR007319), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G61210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPJHeggNOG:KOG1539EMBL:AY059784EMBL:AY096634
EMBL:CP002687EnsemblPlants:AT4G04940EnsemblPlants:AT4G04940.1entrez:825833
Gene3D:2.130.10.10GeneID:825833GO:GO:0006364GO:GO:0032040
Gramene:AT4G04940.1hmmpanther:PTHR22840HOGENOM:HOG000217777InterPro:IPR001680
InterPro:IPR007319InterPro:IPR015943InterPro:IPR017986InterPro:IPR019775
InterPro:IPR024977KEGG:ath:AT4G04940KO:K14554OMA:HVPTRQI
Pfam:PF00400Pfam:PF04192Pfam:PF12894Pfscan:PS50082
Pfscan:PS50294PhylomeDB:Q93YS7PROSITE:PS00678PROSITE:PS50082
PROSITE:PS50294Proteomes:UP000006548RefSeq:NP_567275.1scanprosite:PS00678
SMART:SM00320SMR:Q93YS7STRING:3702.AT4G04940.1SUPFAM:SSF50978
TAIR:AT4G04940UniGene:At.4051UniGene:At.4052UniProt:Q93YS7
Coordinates (TAIR10) chr4:-:2511212..2517052
Molecular Weight (calculated) 102223.00 Da
IEP (calculated) 6.94
GRAVY (calculated) -0.13
Length 910 amino acids
Sequence (TAIR10)
(BLAST)
001: MGIFEPFRAI GYITSTVPFS VQRLGTETFV TVSVGKAFQI YNCAKLNLVI ISPQLPKKIR ALASYRDYTF VAFGNEIAVF RRAHQVATWS KHVAKVDLLL
101: VFGEHVLSLD VEGNMFIWAF KGIEEHLAPI GNLQLTGKFT PTSIVHPDTY LNKVLVGSQE GPLQLWNINT KKMLYQFKGW GSSVTSCVSS PALDVVAIGC
201: ADGKIHVHNI KLDEEIVTFE HASRGAVTAL SFSTDGRPLL ASGGSFGVIS IWNLNKKRLQ SVIRDAHDSS IISLNFLANE PVLMSASADN SLKMWIFDTN
301: DGDPRLLRFR SGHSAPPLCI RFYSNGRHIL SAGQDRAFRL FSVIQEQQSR ELSQRHISRR AKKLRLKEEE LKLKPVVSFD CAEIRERDWC NVVTCHMDTA
401: EAYVWRLQNF VLGEHILKPC PENPTPIKAC AISACGNFAV VGTAGGWIER FNLQSGISRG SYFDMSEKRR YAHDGEVIGV ACDSTNTLMI SAGYHGDLKV
501: WDFKKRELKS QWDVGCSLVK IVYHRVNGLL ATVADDFVIR LYDVVTLKMV REFRGHTDRI TDLCFSEDGK WVISSSMDGS LRIWDVILAK QIDGVHVDVP
601: ITALSLSPNM DVLATAHSDQ NGVYLWVNQS MFSGLPSVES YASGKDVVNV KLPSVSALTS SEADDDMDRQ VLENSEALQA SSFSISQKQI PELVTLSLLP
701: KSQWQSLINL DIIKARNKPI EPPKKPEKAP FFLPSIPSLS GDILFKANDS EADGENEENN KKDQNSMKNF DALESPFSKH LKSSWDSKHF LDFTNYMKSL
801: SPSALDMELR MLEIIDEDVE EELIKRPEFI LIGQLLDYFI NEVSCKNDFE FMQAVVKLFL KIHGETIRCH PSLQEKAKKL LETQSLVWQK MEKLFQSTRC
901: IVTFLSNSQF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)