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AT3G61170.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G27610.1); Has 48118 Blast hits to 13655 proteins in 239 species: Archae - 0; Bacteria - 10; Metazoa - 89; Fungi - 49; Plants - 47457; Viruses - 0; Other Eukaryotes - 513 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AL137898EMBL:CP002686
EnsemblPlants:AT3G61170EnsemblPlants:AT3G61170.1entrez:825289Gene3D:1.25.40.10
GeneID:825289GO:GO:0008270Gramene:AT3G61170.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF894HOGENOM:HOG000237570InterPro:IPR002885InterPro:IPR011990
InterPro:IPR032867KEGG:ath:AT3G61170OMA:GAPIRIFPfam:PF01535
Pfam:PF13041Pfam:PF13812Pfam:PF14432Pfscan:PS51375
PhylomeDB:Q9M2E7PIR:T47909PROSITE:PS51375Proteomes:UP000006548
RefSeq:NP_191676.1SMR:Q9M2E7STRING:3702.AT3G61170.1SUPFAM:SSF48452
TAIR:AT3G61170TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.172
UniGene:At.54031UniProt:Q9M2E7
Coordinates (TAIR10) chr3:-:22638691..22641237
Molecular Weight (calculated) 87744.10 Da
IEP (calculated) 7.31
GRAVY (calculated) -0.11
Length 783 amino acids
Sequence (TAIR10)
(BLAST)
001: MHRLNYRKWR LPLKPFGSCI HSYADRTKLH SNLLLGDLSK SGRVDEARQM FDKMPERDEF TWNTMIVAYS NSRRLSDAEK LFRSNPVKNT ISWNALISGY
101: CKSGSKVEAF NLFWEMQSDG IKPNEYTLGS VLRMCTSLVL LLRGEQIHGH TIKTGFDLDV NVVNGLLAMY AQCKRISEAE YLFETMEGEK NNVTWTSMLT
201: GYSQNGFAFK AIECFRDLRR EGNQSNQYTF PSVLTACASV SACRVGVQVH CCIVKSGFKT NIYVQSALID MYAKCREMES ARALLEGMEV DDVVSWNSMI
301: VGCVRQGLIG EALSMFGRMH ERDMKIDDFT IPSILNCFAL SRTEMKIASS AHCLIVKTGY ATYKLVNNAL VDMYAKRGIM DSALKVFEGM IEKDVISWTA
401: LVTGNTHNGS YDEALKLFCN MRVGGITPDK IVTASVLSAS AELTLLEFGQ QVHGNYIKSG FPSSLSVNNS LVTMYTKCGS LEDANVIFNS MEIRDLITWT
501: CLIVGYAKNG LLEDAQRYFD SMRTVYGITP GPEHYACMID LFGRSGDFVK VEQLLHQMEV EPDATVWKAI LAASRKHGNI ENGERAAKTL MELEPNNAVP
601: YVQLSNMYSA AGRQDEAANV RRLMKSRNIS KEPGCSWVEE KGKVHSFMSE DRRHPRMVEI YSKVDEMMLL IKEAGYFADM SFALHDLDKE GKELGLAYHS
701: EKLAVAFGLL VVPSGAPIRI IKNLRVCGDC HSAMKLLVTF AIEGKLGKFC ISVCNNESYK VTNLQLYTFK LLVDVVAEVS EGS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)