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AT3G53080.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : D-galactoside/L-rhamnose binding SUEL lectin protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
D-galactoside/L-rhamnose binding SUEL lectin protein; FUNCTIONS IN: sugar binding, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944), D-galactoside/L-rhamnose binding SUEL lectin (InterPro:IPR000922); BEST Arabidopsis thaliana protein match is: D-galactoside/L-rhamnose binding SUEL lectin protein (TAIR:AT3G53075.1); Has 374 Blast hits to 374 proteins in 37 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 353; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1874eggNOG:KOG0496EMBL:AL132958EMBL:CP002686
EMBL:DQ446764EnsemblPlants:AT3G53080EnsemblPlants:AT3G53080.1entrez:824474
GeneID:824474GO:GO:0004553GO:GO:0005975GO:GO:0030246
Gramene:AT3G53080.1hmmpanther:PTHR23421InterPro:IPR000922InterPro:IPR001944
KEGG:00052+3.2.1.23KEGG:00511+3.2.1.23KEGG:00531+3.2.1.23KEGG:00600+3.2.1.23
KEGG:00604+3.2.1.23KEGG:ath:AT3G53080OMA:ARATMRIPANTHER:PTHR23421
Pfam:PF02140Pfscan:PS50228PhylomeDB:Q9SCQ3PIR:T46154
PROSITE:PS50228Proteomes:UP000006548RefSeq:NP_190876.1SMR:Q9SCQ3
STRING:3702.AT3G53080.1TAIR:AT3G53080TMHMM:TMhelixUniGene:At.35231
UniProt:Q9SCQ3
Coordinates (TAIR10) chr3:+:19678013..19678578
Molecular Weight (calculated) 16991.60 Da
IEP (calculated) 8.34
GRAVY (calculated) -0.23
Length 155 amino acids
Sequence (TAIR10)
(BLAST)
001: METLQCRHQH VFILLLVLFH SSLFGLASKI DVSDDARGIR IDGGQKRFLT NSPQHGKEHA ACTNEEPDLG PLTRISCNEP GYVITKINFA DYGNPTGTCG
101: HFRRGNCGAR ATMRIVKKNC LGKEKCHLLV TDEMFGPSKC KGAPMLAVET TCTIA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)