suba logo
AT3G48680.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31911558 (2020): mitochondrion
  • PMID:31871212 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:23761796 (2013): mitochondrion
  • PMID:23750852 (2013): mitochondrion
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22968828 (2012): mitochondrion
  • PMID:22923678 (2012): mitochondrion
  • PMID:22574745 (2012): mitochondrion
  • PMID:22550958 (2012): plastid
  • PMID:22540835 (2012): mitochondrion
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:21311031 (2011): mitochondrion
  • PMID:20197505 (2010): mitochondrion
  • PMID:19334764 (2009): plasma membrane
  • PMID:18189341 (2008): mitochondrion
  • PMID:17406791 (2007): mitochondrion
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15028209 (2004): plastid
  • PMID:14671022 (2004): mitochondrion
  • PMID:12837548 (2003): mitochondrion
  • PMID:11743115 (2001): mitochondrion
  • PMID:11743114 (2001): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : gamma carbonic anhydrase-like 2
Curator
Summary (TAIR10)
Encodes a mitochondrial gamma carbonic anhydrase-like protein. Component of the NADH dehydrogenase complex.
Computational
Description (TAIR10)
gamma carbonic anhydrase-like 2 (GAMMA CAL2); FUNCTIONS IN: transferase activity; INVOLVED IN: photorespiration; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004); BEST Arabidopsis thaliana protein match is: gamma carbonic anhydrase like 1 (TAIR:AT5G63510.1); Has 6263 Blast hits to 6236 proteins in 1756 species: Archae - 151; Bacteria - 4130; Metazoa - 15; Fungi - 10; Plants - 165; Viruses - 0; Other Eukaryotes - 1792 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G48680-MONOMERBioCyc:MetaCyc:AT3G48680-MONOMERBioGrid:9347eggNOG:COG0663
eggNOG:ENOG410IJ9JEMBL:AF360214EMBL:AL133315EMBL:AY051017
EMBL:CP002686EnsemblPlants:AT3G48680EnsemblPlants:AT3G48680.1entrez:824029
GeneID:824029Genevisible:Q9SMN1GO:GO:0005739GO:GO:0005747
GO:GO:0005774GO:GO:0009507GO:GO:0009651GO:GO:0009737
GO:GO:0009853GO:GO:0010228GO:GO:0031966GO:GO:0045271
GO:GO:0046872Gramene:AT3G48680.1hmmpanther:PTHR13061hmmpanther:PTHR13061:SF0
HOGENOM:HOG000049430InParanoid:Q9SMN1IntAct:Q9SMN1InterPro:IPR011004
iPTMnet:Q9SMN1KEGG:ath:AT3G48680OMA:VESDVMIPaxDb:Q9SMN1
Pfam:Q9SMN1PhylomeDB:Q9SMN1PIR:T46212PRIDE:Q9SMN1
PRO:PR:Q9SMN1ProteinModelPortal:Q9SMN1Proteomes:UP000006548RefSeq:NP_190437.1
SMR:Q9SMN1STRING:3702.AT3G48680.1SUPFAM:SSF51161TAIR:AT3G48680
tair10-symbols:GAMMA CAL2UniGene:At.24698UniGene:At.72948UniGene:At.75571
UniProt:Q9SMN1
Coordinates (TAIR10) chr3:+:18035107..18036773
Molecular Weight (calculated) 27957.70 Da
IEP (calculated) 8.87
GRAVY (calculated) 0.04
Length 256 amino acids
Sequence (TAIR10)
(BLAST)
001: MATSLARISK RSITSAVSSN LIRRYFAAEA VAVATTETPK PKSQVTPSPD RVKWDYRGQR QIIPLGQWLP KVAVDAYVAP NVVLAGQVTV WDGSSVWNGA
101: VLRGDLNKIT VGFCSNVQER CVVHAAWSSP TGLPAQTLID RYVTVGAYSL LRSCTIEPEC IIGQHSILME GSLVETRSIL EAGSVLPPGR RIPSGELWGG
201: NPARFIRTLT NEETLEIPKL AVAINHLSGD YFSEFLPYST IYLEVEKFKK SLGIAI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)