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AT3G48490.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 16 Blast hits to 16 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 1; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J7ACeggNOG:ENOG4111ED6EMBL:AY086240EMBL:BT024753
EMBL:CP002686EnsemblPlants:AT3G48490EnsemblPlants:AT3G48490.1entrez:824008
GeneID:824008Gramene:AT3G48490.1KEGG:ath:AT3G48490OMA:YKNQAQA
PhylomeDB:Q8LD28Proteomes:UP000006548RefSeq:NP_566906.1STRING:3702.AT3G48490.1
TAIR:AT3G48490UniGene:At.35718UniProt:Q8LD28
Coordinates (TAIR10) chr3:+:17961338..17961800
Molecular Weight (calculated) 13301.50 Da
IEP (calculated) 5.76
GRAVY (calculated) -0.93
Length 120 amino acids
Sequence (TAIR10)
(BLAST)
001: MFGRLRPPPS PPDCLERYPA KIIKDDPLSV YESTLLKLKQ GSTRQDTTSS ETEGEENLSS TSSSHVLSSD TQLGDTHDAM AIDSCESSKQ IKSKNPSVLS
101: MFSKYKNQAQ ARNMKTETQE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)