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AT3G45610.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Dof-type zinc finger DNA-binding family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Dof-type zinc finger DNA-binding family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: TARGET OF MONOPTEROS 6 (TAIR:AT5G60200.1); Has 1099 Blast hits to 1094 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1090; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Protein Annotations
BioGrid:9023EMBL:AJ243033EMBL:AL138657EMBL:AY062783
EMBL:BT006284EMBL:CP002686EnsemblPlants:AT3G45610EnsemblPlants:AT3G45610.1
entrez:823703GeneID:823703Genevisible:Q9M1E6GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0044212
GO:GO:0046872Gramene:AT3G45610.1hmmpanther:PTHR31992HOGENOM:HOG000112244
InParanoid:Q9M1E6InterPro:IPR003851KEGG:ath:AT3G45610OMA:NISNEQM
PaxDb:Q9M1E6Pfam:PF02701Pfam:Q9M1E6Pfscan:PS50884
PhylomeDB:Q9M1E6PIR:T47501PRIDE:Q9M1E6PRO:PR:Q9M1E6
ProDom:PD007478PROSITE:PS01361PROSITE:PS50884Proteomes:UP000006548
RefSeq:NP_190147.1scanprosite:PS01361STRING:3702.AT3G45610.1TAIR:AT3G45610
UniGene:At.478UniProt:Q9M1E6
Coordinates (TAIR10) chr3:-:16739530..16740352
Molecular Weight (calculated) 26959.60 Da
IEP (calculated) 9.11
GRAVY (calculated) -0.72
Length 245 amino acids
Sequence (TAIR10)
(BLAST)
001: MDYSSMHQNV MGVSSCSTQD YQNQKKPLSA TRPAPPEQSL RCPRCDSTNT KFCYYNNYSL SQPRYFCKSC RRYWTKGGIL RNIPIGGAYR KHKRSSSATK
101: SLRTTPEPTM THDGKSFPTA SFGYNNNNIS NEQMELGLAY ALLNKQPLGV SSHLGFGSSQ SPMAMDGVYG TTSHQMENTG YAFGNGGGGM EQMATSDPNR
201: VLWGFPWQMN MGGGSGHGHG HVDQIDSGRE IWSSTVNYIN TGALL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)