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AT3G42800.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54200.1); Has 853 Blast hits to 340 proteins in 98 species: Archae - 0; Bacteria - 94; Metazoa - 145; Fungi - 62; Plants - 95; Viruses - 0; Other Eukaryotes - 457 (source: NCBI BLink).
Protein Annotations
EMBL:AK175521EMBL:AK222200EMBL:AL138639EMBL:BT011741
EMBL:CP002686EnsemblPlants:AT3G42800EnsemblPlants:AT3G42800.1entrez:823322
GeneID:823322Genevisible:Q9M2B3GO:GO:0005886GO:GO:0009734
GO:GO:0010929GO:GO:0060918Gramene:AT3G42800.1hmmpanther:PTHR33541
hmmpanther:PTHR33541:SF5HOGENOM:HOG000243422IntAct:Q9M2B3iPTMnet:Q9M2B3
KEGG:ath:AT3G42800OMA:TEFTCITPaxDb:Q9M2B3PhylomeDB:Q9M2B3
PIR:T47338ProteinModelPortal:Q9M2B3Proteomes:UP000006548RefSeq:NP_189866.1
TAIR:AT3G42800UniGene:At.50241UniProt:Q9M2B3
Coordinates (TAIR10) chr3:+:14905837..14906862
Molecular Weight (calculated) 38961.50 Da
IEP (calculated) 10.19
GRAVY (calculated) -1.02
Length 341 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFPQRKRTP SFSSSVLDSV YRSIDESDGL QSDLKGSINE NVSSSSSSPS PNKKDDKLTT LRRAIMDEEH WLYARSSTTT TNSSDSSSFS SSEAESYRTK
101: RRLRKLAEQG KRSGDERQRT KRTVMDNDSR LFSKSDDDKK PKAVKIIEEL KRSKQPVSPG ARLTSFLNSI FQSNAKKVKL CSVGKTTDVK SSSSKSCFSR
201: TRNKTDNNNN NCKKLERSIR FYPVRVTIDG DCRDYAQKHI TRVRKPIPEF TAKKSVKEEI KTNDHHTEFT CITRNIGLKD FVRSNKYEGK EEEEDAWSHS
301: SSDLFELDSY RIGMGRYLKE LPVYETTDFK TNQAIARSLL L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)