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AT3G20490.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 754 Blast hits to 165 proteins in 64 species: Archae - 0; Bacteria - 48; Metazoa - 26; Fungi - 25; Plants - 36; Viruses - 0; Other Eukaryotes - 619 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVZ2eggNOG:ENOG410YGV5EMBL:CP002686EnsemblPlants:AT3G20490
EnsemblPlants:AT3G20490.1entrez:821595GeneID:821595Gramene:AT3G20490.1
hmmpanther:PTHR38371hmmpanther:PTHR38371:SF1InParanoid:F4JEP8KEGG:ath:AT3G20490
OMA:HYRKESGPaxDb:F4JEP8PRIDE:F4JEP8Proteomes:UP000006548
RefSeq:NP_188685.2TAIR:AT3G20490UniGene:At.38226UniProt:F4JEP8
Coordinates (TAIR10) chr3:-:7154178..7156382
Molecular Weight (calculated) 50334.90 Da
IEP (calculated) 9.82
GRAVY (calculated) -0.93
Length 458 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSIEPPSFS LGFDLDAASD LQSEIHQNPS STGDQLIGDG DNEPELGLTV SDSDRELEPD FTSPVLKRLR RGINPNKCSV KDDRSVAVED RDDDIEEFSS
101: PEDFPTDAPA STRSHFSSCS SRVPLHGSGV LSNQPSISRG KRKQSDVQAS AASGISSVAS LFQMSSRSPL RRFQLLDSDS EDDHPSTSRD LSGATKKHDS
201: FSKNQPSIAS KPKRKEPGSI PCIKDLWKDF SPASSKIQTP AFDDVCQDYF ISIKTTSTAQ KQSSAVASSS NSGNHNLTGF QQTELFHDFS HPSPPSHRFF
301: LHSDPRIRNL ARQRLPNFFP LGIVNDRESQ REVFLVDYMN QFGSKGSSKA GDSSSKSCRR GKTKSKVSKS QESAHNSEGW LNPKTRAAAP KDAGKRRVSA
401: DSGSAGHWFT SPEGRKVYIS KSGQEFSGQS AYRCYKKENG VGFKKSRKKR QPKKKAKN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)