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AT3G15630.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52720.1); Has 61 Blast hits to 61 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JHT4eggNOG:ENOG410ZUQDEMBL:AB017071EMBL:AY052241
EMBL:AY060508EMBL:CP002686EnsemblPlants:AT3G15630EnsemblPlants:AT3G15630.1
entrez:820805GeneID:820805Gramene:AT3G15630.1hmmpanther:PTHR34198
HOGENOM:HOG000241240KEGG:ath:AT3G15630OMA:FGMSSEPPhylomeDB:Q9LW16
Proteomes:UP000006548RefSeq:NP_566521.1STRING:3702.AT3G15630.1TAIR:AT3G15630
UniGene:At.20536UniProt:Q9LW16
Coordinates (TAIR10) chr3:-:5297188..5297511
Molecular Weight (calculated) 11894.20 Da
IEP (calculated) 9.68
GRAVY (calculated) -0.45
Length 107 amino acids
Sequence (TAIR10)
(BLAST)
001: MATIISCSAL SSIRASSESD PARKKPVSSV SWWAPLFGMS SEPDYVNKTV NLESDLDKAE KRSLRCCLTE EKAKQLRRKT AEASTFHDVM YHSAIASRLA
101: SDVRVKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)