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AT3G14380.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.911
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Uncharacterised protein family (UPF0497)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Uncharacterised protein family (UPF0497); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT1G17200.1); Has 637 Blast hits to 637 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 637; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JSPJeggNOG:ENOG41108MCEMBL:AB022220EMBL:BX825321EMBL:CP002686EnsemblPlants:AT3G14380EnsemblPlants:AT3G14380.1
entrez:820659GeneID:820659Genevisible:Q9LUL1GO:GO:0005829GO:GO:0005886GO:GO:0010227GO:GO:0016021
GO:GO:0016226GO:GO:0051536hmmpanther:PTHR11615hmmpanther:PTHR11615:SF151HOGENOM:HOG000238912InParanoid:Q9LUL1InterPro:IPR006459
InterPro:IPR006702iPTMnet:Q9LUL1KEGG:ath:AT3G14380OMA:ITWSSACPaxDb:Q9LUL1Pfam:PF04535Pfam:Q9LUL1
PhylomeDB:Q9LUL1PRIDE:Q9LUL1PRO:PR:Q9LUL1Proteomes:UP000006548RefSeq:NP_188055.1STRING:3702.AT3G14380.1TAIR:AT3G14380
TIGRfam:TIGR01569TIGRFAMs:TIGR01569TMHMM:TMhelixUniGene:At.39246UniProt:Q9LUL1
Coordinates (TAIR10) chr3:-:4803175..4803799
Molecular Weight (calculated) 19185.40 Da
IEP (calculated) 5.02
GRAVY (calculated) 0.77
Length 178 amino acids
Sequence (TAIR10)
(BLAST)
001: MDKTDQTAID ESALVLNRTE KSAEAVLRVA SMALSITGLV IMIKNSISNE FGSVSYSNIG AFMYLVSANG VCAAYSLLSA LAILALPCPI SKVQVRTLFL
101: LDQVVTYVVL AAGAVSAETV YLAYYGNIPI TWSSACDSYG SFCHNALISV VFTFVVSLLY MLLSLISSYR LFTRFEAP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)