AT2G47120.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 0.918 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : NAD(P)-binding Rossmann-fold superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, flower; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G47130.1); Has 118001 Blast hits to 117785 proteins in 3546 species: Archae - 987; Bacteria - 76777; Metazoa - 5079; Fungi - 6314; Plants - 2561; Viruses - 4; Other Eukaryotes - 26279 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:-:19347359..19348223 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 27260.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.31 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.08 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 258 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSGLRLEGKI VIITGGASGI GADAARLFTD HGAKVVIVDV QEELGQNVAV LIGKDKASFY RCDVTNETEV EDAVKFTVEK HGKLDVLFSN AGVLEPLESF 101: LDFDLERFDR IMAVNVRGAA AFIKHAARAM VEKGTRGSIV CTTSVSAEIG GGHHGYTASK HGLVGLIRSA CGDLGKYGIR VNGVAPYAVA TPMTSHDEVT 201: GKQLEDYFDA KGILKGMVLK ASHVAQVALF LASDDSAYIS GQNLAVDGGY TVVKPSRD |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)