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AT2G47120.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.918
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : NAD(P)-binding Rossmann-fold superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, flower; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G47130.1); Has 118001 Blast hits to 117785 proteins in 3546 species: Archae - 987; Bacteria - 76777; Metazoa - 5079; Fungi - 6314; Plants - 2561; Viruses - 4; Other Eukaryotes - 26279 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G47120-MONOMEREC:1.1.1.-eggNOG:COG1028eggNOG:KOG0725
EMBL:AC004411EMBL:CP002685EnsemblPlants:AT2G47120EnsemblPlants:AT2G47120.1
entrez:819325Gene3D:3.40.50.720GeneID:819325Genevisible:O80714
GO:GO:0016491Gramene:AT2G47120.1hmmpanther:PTHR24322hmmpanther:PTHR24322:SF498
InParanoid:O80714InterPro:IPR002347InterPro:IPR016040KEGG:ath:AT2G47120
OMA:THTHELIPANTHER:PTHR24322PaxDb:O80714Pfam:O80714
Pfam:PF00106PhylomeDB:O80714PIR:T02176PRIDE:O80714
PRINTS:PR00080PRINTS:PR00081PRO:PR:O80714ProteinModelPortal:O80714
Proteomes:UP000006548Reactome:R-ATH-2142700Reactome:R-ATH-70895RefSeq:NP_182234.1
SMR:O80714STRING:3702.AT2G47120.1SUPFAM:SSF51735TAIR:AT2G47120
UniGene:At.36406UniProt:O80714
Coordinates (TAIR10) chr2:-:19347359..19348223
Molecular Weight (calculated) 27260.60 Da
IEP (calculated) 6.31
GRAVY (calculated) 0.08
Length 258 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGLRLEGKI VIITGGASGI GADAARLFTD HGAKVVIVDV QEELGQNVAV LIGKDKASFY RCDVTNETEV EDAVKFTVEK HGKLDVLFSN AGVLEPLESF
101: LDFDLERFDR IMAVNVRGAA AFIKHAARAM VEKGTRGSIV CTTSVSAEIG GGHHGYTASK HGLVGLIRSA CGDLGKYGIR VNGVAPYAVA TPMTSHDEVT
201: GKQLEDYFDA KGILKGMVLK ASHVAQVALF LASDDSAYIS GQNLAVDGGY TVVKPSRD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)