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AT2G46990.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.732
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : indole-3-acetic acid inducible 20
Curator
Summary (TAIR10)
Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA20 lacks the conserved degron (domain II) found in many family members, and IAA20 fusion proteins are stable in Arabidopsis seedlings. IAA20 transcripts are induced by auxin treatment, and overexpression of IAA20 leads to defects in gravitropism, root development, root meristem maintenance, etiolation, and cotyledon vascular development.
Computational
Description (TAIR10)
indole-3-acetic acid inducible 20 (IAA20); CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: indole-3-acetic acid inducible 30 (TAIR:AT3G62100.1); Has 1768 Blast hits to 1768 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1767; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
BioGrid:4648DNASU:819313eggNOG:ENOG410JGDEeggNOG:ENOG411174J
EMBL:AC004411EMBL:AF348576EMBL:AK117233EMBL:CP002685
EMBL:U49076EnsemblPlants:AT2G46990EnsemblPlants:AT2G46990.1entrez:819313
GeneID:819313Genevisible:O24410GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0009630GO:GO:0009647GO:GO:0009733
GO:GO:0009734GO:GO:0010588GO:GO:0048364Gramene:AT2G46990.1
hmmpanther:PTHR31734hmmpanther:PTHR31734:SF15HOGENOM:HOG000005696InParanoid:O24410
IntAct:O24410InterPro:IPR000270InterPro:IPR003311InterPro:IPR033389
KEGG:ath:AT2G46990KO:K14484OMA:KISRANYPANTHER:PTHR31734
PaxDb:O24410Pfam:O24410Pfam:PF02309Pfscan:PS51745
PhylomeDB:O24410PIR:T02188PRIDE:O24410PRO:PR:O24410
PROSITE:PS51745ProteinModelPortal:O24410Proteomes:UP000006548RefSeq:NP_182222.1
SMR:O24410STRING:3702.AT2G46990.1SUPFAM:SSF54277TAIR:AT2G46990
tair10-symbols:IAA20UniGene:At.10480UniProt:O24410
Coordinates (TAIR10) chr2:+:19307861..19308869
Molecular Weight (calculated) 19445.60 Da
IEP (calculated) 4.45
GRAVY (calculated) -0.40
Length 175 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRGRSSSSS SIESSSKSNP FGASSSTRNL STDLRLGLSF GTSSGTQYFN GGYGYSVAAP AVEDAEYVAA VEEEEENECN SVGSFYVKVN MEGVPIGRKI
101: DLMSLNGYRD LIRTLDFMFN ASILWAEEED MCNEKSHVLT YADKEGDWMM VGDVPWEMFL STVRRLKISR ANYHY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)