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AT2G43530.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Scorpion toxin-like knottin superfamily protein
Curator
Summary (TAIR10)
Encodes a defensin-like (DEFL) family protein.
Computational
Description (TAIR10)
Scorpion toxin-like knottin superfamily protein; FUNCTIONS IN: ion channel inhibitor activity; INVOLVED IN: defense response; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Scorpion long chain toxin (InterPro:IPR002061), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: trypsin inhibitor protein 2 (TAIR:AT2G43520.1); Has 146 Blast hits to 146 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
EMBL:AC002335EMBL:AJ632250EMBL:AJ632251EMBL:AJ632252
EMBL:AJ632253EMBL:AJ632254EMBL:AJ632255EMBL:AJ632256
EMBL:AJ632257EMBL:AJ632258EMBL:AJ632259EMBL:AJ632260
EMBL:AJ632261EMBL:AJ632262EMBL:AJ632263EMBL:AJ632264
EMBL:AJ632265EMBL:AJ632266EMBL:AK317158EMBL:BX819403
EMBL:CP002685EnsemblPlants:AT2G43530EnsemblPlants:AT2G43530.1entrez:818954
Gene3D:3.30.30.10GeneID:818954Genevisible:O22867GO:GO:0005576
GO:GO:0008200GO:GO:0031640GO:GO:0050832Gramene:AT2G43530.1
InterPro:IPR002061InterPro:IPR003614KEGG:ath:AT2G43530PaxDb:O22867
Pfam:O22867Pfam:PF00537PhylomeDB:O22867PIR:C84867
PRIDE:O22867PRO:PR:O22867ProteinModelPortal:O22867Proteomes:UP000006548
RefSeq:NP_181881.1SMART:SM00505SMR:O22867STRING:3702.AT2G43530.1
SUPFAM:SSF57095TAIR:AT2G43530UniGene:At.36880UniProt:O22867
Coordinates (TAIR10) chr2:+:18070104..18070523
Molecular Weight (calculated) 9596.87 Da
IEP (calculated) 8.19
GRAVY (calculated) 0.15
Length 85 amino acids
Sequence (TAIR10)
(BLAST)
1: MGMAMKSVSN FAIFLILFLV TSEISEIEAK DKECLKGYID APLSYCMARI YPSLCYRNCR FYKGAKGGKC DGLKCFCDFC SDKPF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)