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AT2G29125.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ROTUNDIFOLIA like 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ROTUNDIFOLIA like 2 (RTFL2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: shoot development; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: DVL (InterPro:IPR012552); BEST Arabidopsis thaliana protein match is: ROTUNDIFOLIA like 5 (TAIR:AT5G59510.1); Has 16866 Blast hits to 1973 proteins in 272 species: Archae - 2; Bacteria - 875; Metazoa - 2928; Fungi - 1594; Plants - 245; Viruses - 25; Other Eukaryotes - 11197 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JPEVeggNOG:ENOG410ZEKBEMBL:AY136336EMBL:BK001756
EMBL:BT000101EMBL:CP002685EnsemblPlants:AT2G29125EnsemblPlants:AT2G29125.1
entrez:817461GeneID:817461GO:GO:0048367Gramene:AT2G29125.1
hmmpanther:PTHR33102hmmpanther:PTHR33102:SF3HOGENOM:HOG000239953IntAct:Q8L7D0
InterPro:IPR012552KEGG:ath:AT2G29125OMA:CALPRSYPfam:PF08137
Proteomes:UP000006548RefSeq:NP_850130.1STRING:3702.AT2G29125.1TAIR:AT2G29125
tair10-symbols:DVL13tair10-symbols:RTFL2UniGene:At.45004UniProt:Q8L7D0
Coordinates (TAIR10) chr2:+:12523472..12523819
Molecular Weight (calculated) 12651.70 Da
IEP (calculated) 11.26
GRAVY (calculated) -0.78
Length 115 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEKWKLSKK DTTASSSSSK SKFSRSFSTS ASSTKSPIFV RSSSTKCSVP SSSSSSSSSS SISRSFSRKE RRSSSSSSSS ITQKYSSLAK EQKARFYIMR
101: RCVAMLVCWH KHGDS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)