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AT2G23740.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: chromatin modification; LOCATED IN: nucleus, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), SET domain (InterPro:IPR001214), Pre-SET zinc-binding sub-group (InterPro:IPR003606), Post-SET domain (InterPro:IPR003616), Pre-SET domain (InterPro:IPR007728), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: SU(VAR)3-9 homolog 5 (TAIR:AT2G35160.1); Has 5962 Blast hits to 5734 proteins in 461 species: Archae - 0; Bacteria - 386; Metazoa - 2995; Fungi - 515; Plants - 1025; Viruses - 0; Other Eukaryotes - 1041 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2940eggNOG:KOG1082eggNOG:KOG1721EMBL:CP002685EnsemblPlants:AT2G23740EnsemblPlants:AT2G23740.1entrez:816905
ExpressionAtlas:F4IMM1GeneID:816905GO:GO:0005634GO:GO:0005694GO:GO:0008270GO:GO:0018024Gramene:AT2G23740.1
hmmpanther:PTHR22884hmmpanther:PTHR22884:SF299InParanoid:F4IMM1InterPro:IPR001214InterPro:IPR003616InterPro:IPR007087InterPro:IPR007728
InterPro:IPR015880ncoils:CoilPaxDb:F4IMM1Pfam:PF00856Pfam:PF05033Pfscan:PS50157Pfscan:PS50280
Pfscan:PS50867Pfscan:PS50868PRIDE:F4IMM1PROSITE:PS00028PROSITE:PS50157PROSITE:PS50280PROSITE:PS50867
PROSITE:PS50868ProteinModelPortal:F4IMM1Proteomes:UP000006548RefSeq:NP_179954.2scanprosite:PS00028SMART:SM00317SMART:SM00355
SMART:SM00468SMART:SM00508SMR:F4IMM1STRING:3702.AT2G23740.2SUPFAM:SSF82199TAIR:AT2G23740UniGene:At.45723
UniGene:At.52882UniProt:F4IMM1
Coordinates (TAIR10) chr2:+:10098213..10103229
Molecular Weight (calculated) 154925.00 Da
IEP (calculated) 6.77
GRAVY (calculated) -0.48
Length 1375 amino acids
Sequence (TAIR10)
(BLAST)
0001: MEVKMDELVL DVDVEEATGS ELLVKSEPEA DLNAVKSSTD LVTVTGPIGK NGEGESSPSE PKWLQQDEPI ALWVKWRGKW QAGIRCAKAD WPLTTLRGKP
0101: THDRKKYCVI FFPHTKNYSW ADMQLVRSIN EFPDPIAYKS HKIGLKLVKD LTAARRYIMR KLTVGMFNIV DQFPSEVVSE AARDIIIWKE FAMEATRSTS
0201: YHDLGIMLVK LHSMILQRYM DPIWLENSFP LWVQKCNNAV NAESIELLNE WNEVKSLSES PMQPMLLSEW KTWKHDIAKW FSISRRGVGE IAQPDSKSVF
0301: NSDVQASRKR PKLEIRRAET TNATHMESDT SPQGLSAIDS EFFSSRGNTN SPETMKEENP VMNTPENGLD LWDGIVVEAG GSQFMKTKET NGLSHPQDQH
0401: INESVLKKPF GSGNKSQQCI AFIESKGRQC VRWANEGDVY CCVHLASRFT TKSMKNEGSP AVEAPMCGGV TVLGTKCKHR SLPGFLYCKK HRPHTGMVKP
0501: DDSSSFLVKR KVSEIMSTLE TNQCQDLVPF GEPEGPSFEK QEPHGATSFT EMFEHCSQED NLCIGSCSEN SYISCSEFST KHSLYCEQHL PNWLKRARNG
0601: KSRIISKEVF VDLLRGCLSR EEKLALHQAC DIFYKLFKSV LSLRNSVPME VQIDWAKTEA SRNADAGVGE FLMKLVSNER ERLTRIWGFA TGADEEDVSL
0701: SEYPNRLLAI TNTCDDDDDK EKWSFSGFAC AICLDSFVRR KLLEIHVEER HHVQFAEKCM LLQCIPCGSH FGDKEQLLVH VQAVHPSECK SLTVASECNL
0801: TNGEFSQKPE AGSSQIVVSQ NNENTSGVHK FVCKFCGLKF NLLPDLGRHH QAEHMGPSLV GSRGPKKGIR FNTYRMKSGR LSRPNKFKKS LGAVSYRIRN
0901: RAGVNMKRRM QGSKSLGTEG NTEAGVSPPL DDSRNFDGVT DAHCSVVSDI LLSKVQKAKH RPNNLDILSA ARSACCRVSV ETSLEAKFGD LPDRIYLKAA
1001: KLCGEQGVQV QWHQEGYICS NGCKPVKDPN LLHPLIPRQE NDRFGIAVDA GQHSNIELEV DECHCIMEAH HFSKRPFGNT AVLCKDISFG KESVPICVVD
1101: DDLWNSEKPY EMPWECFTYV TNSILHPSMD LVKENLQLRC SCRSSVCSPV TCDHVYLFGN DFEDARDIYG KSMRCRFPYD GKQRIILEEG YPVYECNKFC
1201: GCSRTCQNRV LQNGIRAKLE VFRTESKGWG LRACEHILRG TFVCEYIGEV LDQQEANKRR NQYGNGDCSY ILDIDANIND IGRLMEEELD YAIDATTHGN
1301: ISRFINHSCS PNLVNHQVIV ESMESPLAHI GLYASMDIAA GEEITRDYGR RPVPSEQENE HPCHCKATNC RGLLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)