AT2G20320.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : DENN (AEX-3) domain-containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
DENN (AEX-3) domain-containing protein; CONTAINS InterPro DOMAIN/s: uDENN (InterPro:IPR005113), dDENN (InterPro:IPR005112), DENN (InterPro:IPR001194); BEST Arabidopsis thaliana protein match is: DENN (AEX-3) domain-containing protein (TAIR:AT5G35560.1); Has 1567 Blast hits to 1546 proteins in 147 species: Archae - 0; Bacteria - 2; Metazoa - 1072; Fungi - 78; Plants - 117; Viruses - 0; Other Eukaryotes - 298 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:+:8767082..8772271 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 115641.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.05 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.44 | ||||||||||||||||||||||||||||||||||||
| Length | 1029 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MKPSFNTDMQ GDVLAVHRDD ILGYPKKTDV EDFRDGDENG WTTSSRRNTL DMVKEGMLLN AEELTTSCEE KVSISRDEFG TLRSEAQIMV ERDGVRSPVT 0101: SKCKTGDEQI TSWKNENGHE SFKLYEQGVL ERDEKVLDFV SRDNEESASG SPERDDITLS KEIKELDTQV VNGHLKVGGT EEDTAACDRC ENRDENRLLE 0201: KNSEDNELQS PRCETQVNNT SIRKMEMREV IGEQDSSPCT ADAVKVAGET YQNVYFNGPV LPQSPTQGHR RTQSEIGTPG HRRTNSFQRL KTQMQKAWRG 0301: VSNLREDNRP TFNPEVLANQ KRQWYQLHSS KALDQTKLKE PASLFEHFII VGLHPETNLR PVEEAFRRRK KWEMEMSRYE VADYRILRHR GPQFPILEPQ 0401: ILFKYPPGKK VAMRPKDLAT FCFPGGVKAR LLERTPSLSD LNELVYGQEH LGTDDSSFIF SFKVADDATL YGVCLHVSEI VQRPPGVLST ASPLHSSGGG 0501: SRFLVSAPRC YCLLTRVPFF ELHFEMLNSM IAQERLKRIT EFVSEMSLAA ACYLPSISRR NDQIDSRVSS PRSNPDDWMA SAIPVDGVMA LTAAAAGLIT 0601: DSDIANFAEP QSPDSVVTSD TSDVSQIKEI ERDGRKVFHC YDENSPEVFE NHLDTPERTS QSYDNGHTSP EVTCSDPRTQ PIERNESCES VFSSARSVLS 0701: DDVDELSNSE NDFGDDLILE WAKDHNNDSL QLVCGYHSLA IPSRGSEVVF HPLEHLQSIS YTRPPVSALG LSEEYICSSD SKEINARLAA AEEAMGLSMW 0801: TTATVCRILS LETIMSLLAG VLLEKQIVII CPNLGVLSAI VLSLVPMIRP FQWQSLLLPV LPGRMFDFLE APVPFLVGIH SKPIDWKVKT SNLILVNILN 0901: NQVKICNMPA LPQCRELMAQ LAPIHATLAH QSSNARRHPV YKCNEVQAEA ATKFLRVMRD YMESLCSDLH SHTITSVQSN SDRVSLLLKD SFIDSFPGRD 1001: RPFIKLFVDT QLFSVLSDSR LSSFENGSL |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)