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AT2G17845.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.666
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : NAD(P)-binding Rossmann-fold superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: sepal, male gametophyte, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G55290.1); Has 126813 Blast hits to 126599 proteins in 3671 species: Archae - 1009; Bacteria - 81518; Metazoa - 7137; Fungi - 6641; Plants - 3198; Viruses - 2; Other Eukaryotes - 27308 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1028eggNOG:KOG0725EMBL:CP002685EnsemblPlants:AT2G17845
EnsemblPlants:AT2G17845.1entrez:816294Gene3D:3.40.50.720GeneID:816294
GO:GO:0016491Gramene:AT2G17845.1hmmpanther:PTHR24322hmmpanther:PTHR24322:SF575
InParanoid:F4IPI3InterPro:IPR002347InterPro:IPR016040InterPro:IPR020904
KEGG:ath:AT2G17845OMA:VSIAKRWPANTHER:PTHR24322PaxDb:F4IPI3
Pfam:PF00106PhylomeDB:F4IPI3PRIDE:F4IPI3PRINTS:PR00080
PRINTS:PR00081PROSITE:PS00061ProteinModelPortal:F4IPI3Proteomes:UP000006548
RefSeq:NP_565425.1scanprosite:PS00061SMR:F4IPI3STRING:3702.AT2G17845.1
SUPFAM:SSF51735TAIR:AT2G17845UniGene:At.52789UniProt:F4IPI3
Coordinates (TAIR10) chr2:+:7758846..7759881
Molecular Weight (calculated) 34324.90 Da
IEP (calculated) 9.59
GRAVY (calculated) 0.04
Length 312 amino acids
Sequence (TAIR10)
(BLAST)
001: MSFWFRDKSL YVMGISFSTK EHTKRNNMSN HQTVREILLL LYLTCELKDK VVLVTGASSG IGREVCLDLA KAGCKIIAAA RRVDRLKSLC SEINRFEYSA
101: GIQAEALELD VSSDAATVQK AVKKAWEIFG KIDALINNAG FRGNVKSSLD LSEDEWDKVF KTNLTGTWLV SKYVCILMRD AKRGGGSVIN ISSVSWLHRG
201: QVPGGVAYAC SKGGVDTMTR MMALELGVYK IRVNSIAPGL LKSEITQGLM QKEWLKTVIE RTVPLKVQQT VDPGLTSLLR YLVHDSSKYI SGNTYIVDAG
301: ASLVGLPIFS SL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)