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AT1G78150.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G35780.1); Has 152 Blast hits to 146 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 149; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AK226850EMBL:AK318743EMBL:AY136445EMBL:BT000233
EMBL:CP002684EnsemblPlants:AT1G78150EnsemblPlants:AT1G78150.1EnsemblPlants:AT1G78150.2
entrez:844151ExpressionAtlas:Q8L768GeneID:844151Gramene:AT1G78150.1
Gramene:AT1G78150.2hmmpanther:PTHR31132hmmpanther:PTHR31132:SF2HOGENOM:HOG000239183
InterPro:IPR025131KEGG:ath:AT1G78150Pfam:PF13266PhylomeDB:Q8L768
Proteomes:UP000006548RefSeq:NP_001031296.1RefSeq:NP_177939.2TAIR:AT1G78150
UniGene:At.24379UniGene:At.67879UniProt:Q8L768
Coordinates (TAIR10) chr1:+:29404996..29406341
Molecular Weight (calculated) 29680.60 Da
IEP (calculated) 6.54
GRAVY (calculated) -0.79
Length 274 amino acids
Sequence (TAIR10)
(BLAST)
001: MERSTPVRKP HTSTADLLTW SEVPPPDSPS SASRSAVRSH QPSDGISKVV FGGQVTDEEV ESLNRRKPCS EHKMKEITGS GIFSRNEKDD ASEPLPVYQQ
101: AVNGISQISF GEEENLSPKK PATVPEVAKQ RELSGTMENE SANKLQKQLS DAKYKEISGQ NIFAPPPEIK PRSGTNRALA LKDNFNLGAE SQTAEEDSSV
201: KTAKKIYDKK FAELSGNDIF KGDAASSNVE KHLSQAKLKE IGGNNIFADG KVEARDYLGG VRKPPGGETS IALV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)