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AT1G77250.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/FYVE/PHD-type zinc finger family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/FYVE/PHD-type zinc finger family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: methyl-CPG-binding domain 9 (TAIR:AT3G01460.1); Has 5001 Blast hits to 3477 proteins in 217 species: Archae - 2; Bacteria - 0; Metazoa - 3203; Fungi - 426; Plants - 950; Viruses - 0; Other Eukaryotes - 420 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVBIeggNOG:ENOG410Y8ZDEMBL:BT025330EMBL:CP002684
EnsemblPlants:AT1G77250EnsemblPlants:AT1G77250.1entrez:844061Gene3D:3.30.40.10
GeneID:844061GO:GO:0008270Gramene:AT1G77250.1hmmpanther:PTHR10615
hmmpanther:PTHR10615:SF100HOGENOM:HOG000090483IntAct:Q1JPM3InterPro:IPR001965
InterPro:IPR011011InterPro:IPR013083InterPro:IPR019786InterPro:IPR019787
KEGG:ath:AT1G77250ncoils:CoilOMA:CKEDSNEPfam:PF00628
Pfscan:PS50016PhylomeDB:Q1JPM3PROSITE:PS01359PROSITE:PS50016
Proteomes:UP000006548RefSeq:NP_177849.2scanprosite:PS01359SMART:SM00249
SMR:Q1JPM3SUPFAM:SSF57903TAIR:AT1G77250UniGene:At.50042
UniProt:Q1JPM3
Coordinates (TAIR10) chr1:-:29020444..29022938
Molecular Weight (calculated) 58384.60 Da
IEP (calculated) 6.58
GRAVY (calculated) -0.75
Length 522 amino acids
Sequence (TAIR10)
(BLAST)
001: MFMEEATSNG KGTEHNQPNG LVESEALNNW SAGCGAMANS ANASSRDSKK IQTYKRRKLG RSYSANKCSE NDRFSMEGVS HSESRESVSY ERFSIRTHLT
101: GELPKPPSPN KPSSESTNHE TVTAGCQHVL SHVLASKEFA SLNRLLSENL QGVKIDDFTS RTLIDTRMKE GVYEGSPLLF STDLQEVWQK MQDVGNDMAV
201: LANSLLELSR TSYKEQLKQF YTGESKPCPN AENIRNDSVS DICKLCGEKA EARDCLACDH CEDMYHVSCA QPGGKGMPTH SWYCLDCTSK GIGSPHENCV
301: VCEKMKTQGM MKTDNRSVDT STECKEDSNE SEENSSCNMN HEVHHVEMSR DSELCRTCGT KVDSGGKYIT CDHPFCPHKY YHIRCLTSRQ IKLHGVRWYC
401: SSCLCRNCLT DKDDDKIVLC DGCDDAYHIY CMRPPCESVP NGEWFCTACK AAILKVQKAR KAFEKKMETV QKQKGIKPKN LQGKPQSKDN GELDQSVGGM
501: DMLLNAADTL KDEEQMTFQS IK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)